1. Options of the program
spat_cli.php -infile x2.fasta -problem rspd -order sc -minslack 0 -maxslack 0
2. Summary of the data
Data file: single line format x2.txt Fasta format x2.fasta
Données Nombre Longueur_min Longueur_max Moyenne
Global 7 16 21 18.00
classe 1 3 20 21 20.33
classe 2 3 16 17 16.33
classe 3 1 16 16 16.00
3. Analysis of the data
3.1 spatprog -problem rspd -order sc -minSlack 0 -maxSlac 0
Characterization complete for class 1.
4. Characterization of the classes over the 1 step(s)
Correspondence between class number and class description
|
Class number |
Class description |
|
1 |
a sample class (satisfiable and characterizable) |
|
2 |
a sample satisfiable class that is not characterizable |
|
3 |
another sample satisfiable class that is not characterizable |
Results of the characterization program
It was not possible to solve all the classes. Here are the partial solutions:
|
Class |
Statut |
Proteins |
When |
NonExp |
Motif(s) step 0 |
|
1 |
ok |
3 |
step 0 |
0 |
PAPATANGACHARLYE |
|
2 |
sat |
3 |
|
1 |
EASYCAMPANY |
|
3 |
sat |
1 |
|
1 |
NSAEASYCAMPANYSS |
The positions of the motifs can be read in the xml file: x2.xml
Elapsed time: 0.3 seconds.
| 
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