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SPAT (Soft PATtern discovery)

 

1. Options of the program

spat_cli.php -infile x1.fasta -problem rspd -order sc -minslack 0 -maxslack 0

2. Summary of the data

        Data file: single line format   x1.txt       Fasta format   x1.fasta  

Données         Nombre   Longueur_min Longueur_max   Moyenne  
  Global             6             16           21     18.33
  classe   1         3             20           21     20.33
  classe   2         3             16           17     16.33

3. Analysis of the data

3.1 spatprog -problem rspd -order sc -minSlack 0 -maxSlac 0

Characterization complete for class 1.

Characterization complete for class 2.

all classes characterized at step: maxSlack=0

4. Characterization of the classes over the 1 step(s)

Correspondence between class number and class description

Class number Class description
1 sample class "One"
2 sample class "Two"

 

Results of the characterization program

Class Proteins When Motif(s) step 0
1 3      step 0 PAPATANGACHARLYE
2 3      step 0 EASYCAMPANY

The positions of the motifs can be read in the xml file:  x1.xml 

Elapsed time: 0.2 seconds.

 

 

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