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SPAT (Soft PATtern discovery)

 

1. Options of the program

spat_cli.php -infile idpfs.fasta -problem rspd -order sc -minslack 0 -maxslack 3

2. Summary of the data

        Data file: single line format   idpfs.txt       Fasta format   idpfs.fasta  

Données         Nombre   Longueur_min Longueur_max   Moyenne  
  Global           230             26         1741    246.63
  classe   1        72             94         1741    335.22
  classe   2       158             26          809    206.26

3. Analysis of the data

3.1 spatprog -problem rspd -order sc -minSlack 0 -maxSlac 0

3.2 spatprog -problem rspd -order sc -minSlack 0 -maxSlac 1

3.3 spatprog -problem rspd -order sc -minSlack 0 -maxSlac 2

3.4 spatprog -problem rspd -order sc -minSlack 0 -maxSlac 3

4. Characterization of the classes over the 4 step(s)

Correspondence between class number and class description

Class number Class description
1 IDP = Intrinsically Disordered Proteins
2 FSP = Fully Structured Proteins

 

Results of the characterization program

It was not possible to solve all the classes. Here are the partial solutions:

Class Statut Proteins When NonExp Motif(s) step 0 step 1 (new) step 2 (new) step 3 (new)
1 unsat 72      unsat unsat unsat unsat
2 unsat 158      unsat unsat unsat unsat

The positions of the motifs can be read in the xml file:  idpfs.xml 

Elapsed time: 7.1 seconds.

 

 

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