LOCUS Zea_mays_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Zea mays (maize) -- mitochondrion. REFERENCE 1 AUTHORS Chao,S., Sederoff,R. and Levings,C.S.III. TITLE Nucleotide sequence and evolution of the 18S ribosomal RNA gene in maize mitochondria JOURNAL Nucleic Acids Res. 12, 6629-6644 (1984) COMMENT Corresponding GenBank entry: X00794 common_name= maize BASE COUNT 494 a 464 c 603 g 407 u 3474 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .AUCAUAGUC 121 AAAA-UCUGA GUUUGA-UCC UGGCUCAGAA -GGAACGCU- AGCUA-UAU- G--------- 181 ---------- ---------- ---------- ---------- CUUAA-CACA UGC-AA-GUC 241 GAACG-UU-- GU--UUU-C- -GG------- ---------- ---------- --------GG 301 AGCUGGGCAG AAGGAAAAGA GGCUCCUAGC UAAA-GUUGU CUCGCCCUGC CUG------- 361 CAGGGCGCGC GCAACGGCUU UGACCUAACG GCCUCCGUUU GCUGGAAUCG GAAUAG---- 421 ----UUGAGA ACAA--AGU- -GGC--GAAC GGGUG--CGU AAC--GCGUG -GGAAUC--- 481 -UGC--CGAA C---AG-U-U CGG-G----- ------CCAA AU-------- ------CCUG 541 A--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --A------- 781 ---------- ---GAAA--- ---------- ---------- ---GCU---- ---------C 841 AAA------- ---AGCG-CU -GUUUG---- -AU---GAGC C-UGC-GU-- -AGU-AUU-- 901 --A------- ---------- ---------- ---GGUAG-U UGGUCAG--- ---------- 961 GUAAAGG--- ---------- CU--GAC-CA -A-GCC-AAU GA--UGCUUA --GCUG---G 1021 UCU-UUUC-G GAUGAUCAGC -CAC-ACU-G GGACUGAGAC ACG-GCCCGG ACUCC-CACG 1081 --GGGG---- -----GCA-G CAGUG-GGGA AUC-UUGGAC AA-UGGGC-- ------GAAA 1141 ---------- ---GCCCG-- --AUCCA-G- C-AA-UAU-C GC-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------GU-G 1261 AG-U---GAA GAA-GGGC-- -------AAU GCC------- --GCUU--GU AAA--G-CUC 1321 -UUUCG-UCG AGUGCGC--- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---GAUCAUG 1501 A--------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ------CAGG A-CUCGA-GG 1681 -AAGAAGCCC C--GGCUAA- C---UCCGUG -CCAGCAGCC GC-GGUAA-G ACGG-GG--- 1741 -GGG-GCA-- AGUGUUCUUC -GGAAUGA-C UGGGC-GUAA AG-GGCACGU A-GGCG---- 1801 ---------- ---------- ------GUG- -----AAU-C GGG----UUG AAAGUG--A- 1861 AAGU------ -------CGC CA-------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- -------AAA 1981 AG-------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- -------UGG CG-------- --GA-A--UG 2101 CUC-UCGA-A A-CCA----A UU------CA CUUG--AGU- GAG-ACAGA- G-GAGAGU-- 2161 -----GGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUUC--GUGU --GUA-GGG- -GUGAAA--- 2281 UCC-GUAGAU --CUAC-G-A A-G-GA-AC- GCCA------ ---------- ---------- 2341 ---------- ------AAAG C-GAAG--GC A-GCUCUCU- -GGGUCCCU- --------AC 2401 C--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CG- CU---GGG-- -GUG---C-- GAAAGCAUGG 2641 G-GAGCGAA- CAGGAUUAGA UAC--CC-UG -GUAGUC-CA UGCCGUAAAC GAU--GAG-- 2701 ---UG-UU-- -CGC--CCUU G-GU----CU GUCUA----- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ------CGCU ACGC------ ---------- ---------- 2941 ---------- ---------- ---------U ACGCGG---- --AUCAGGG- -GC-CCAGC- 3001 ------UAAC ---------- -GCGUG-AAA CACUCCG-CC UGG-GGAGU- --AC---GGU 3061 C--GCAA-GA CC-GAA-ACU CAAAGGAA-U UGA------C GGGG-GCCUG ---CA-CA-- 3121 -AGCGGUG-G AGCAUGUGGU UUAAU-UCG- AUA-CAACG- --CGCA---- ------AAAC 3181 CUUA--CCAG CCCUUGAC-- ---------- -------AUA UG-AA----- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- --------CA ACAAAACCUG 3361 U--------- ---CUUUA-- ---------- ACGGGAUGGU ACUUACU--- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ----UUC-A- UA-C------ ---AGGU-GC 3601 UGCA-UG-GC -U----GUCG -UCA------ GCUC--GU-G UC--GUGA-- -GAUGU---- 3661 ---------- ---------- ---UUGG--- --------UC AAGU------ -----CCU-A 3721 -------UA- -AC-GAGC-G AAAC-CCUCG ---------- -----UUUUG UG-UUGC--- 3781 ---------- ---------- ---------- --UGAGACAU GCGCCUAAGG AGAAAU---- 3841 ---------- ---AGCCGAG GAGCCGAGUG ACGUGCCAGC GCUACUACUU GAUU----GA 3901 GUGCCAGCAC GUAGCUGUG- CUUUCCGCAA -GAAUUUCAC CAUUGGGAGC CUC------- 3961 -------GAA GCACUUUCAC GUGUGAACCG AAGUCGUCUU GCC------- ---------- 4021 ---------G AACU------ ---------- ---------- ---------- CAAGACCCAC 4081 GGAGA----- ---------- ---------- --------CC UACCUAUAGU GACGUCAAAG 4141 UACCAGUGAG CAUGGAGGUU UGG--UU-AG GC-UUGGUUA CGACGACGUC GAGUUGGCGG 4201 CGGAGGAAGA CUCGGCAUGA AGGCCAGCCG CCCGGUGGUG UGGUACGUAG UGGUAAUAGU 4261 ACGCGCCCC- ------GCUC CGAAACAAAG AAAAAGGUGC GUGCCGCACU -CACGAGG-- 4321 ---------- ---------- -----GACUG -CCAGU---- GAGAU----A CUGG--AGGA 4381 AGG--UGGGG -----AUGA- ----C-GU-- C-A----AGU CCGCAU-GGC CCU------- 4441 ---------U AUGG-GCUGG -GCCAC---- ---------- ---------- -----ACACG 4501 UGCUA-CAAU --GGCAAUG- -ACAAU-GGG -----AA--- --GC----AA GGCU------ 4561 ---------- -GUAA----- ---------- ---GGC-GGA -----GC--- -----GAA-- 4621 ----U-CC-- GGAAA--GAU UGCC------ -------UCA GUU-CGGAU- -UGU--UC-- 4681 ---------- ---------- -UC-UG--CA ACUC--GG-- ---------- ---------- 4741 ------G-A- -ACA-U-G-- AAG-UAGAA- AUC-GCU-AG UA-AU-CGCG G-AUCAG--- 4801 ---CAUG--C C-GCGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AUGUACC-C GG--GCCC-U GUACACACC- 4921 GCCC-GUC-A CACC-CUGGG A---AUU-GG -U-UUC-GCC -------CGA A----GCAU- 4981 CGGACCAA-- --UGA----U --CACC---- -CAUGA---C UUCUGUGUAC ---------- 5041 ---------- ---------- ---------- ---------- ---------- -------CAC 5101 UA-------- ---------- ---------- ---------- ---------- ---------- 5161 -------GUG CCACAAAGGC CUUU---GGU G-GUC-UUA- ----UUGG-C GC-AUAC--- 5221 CAC------G GUGGGGUCUU C--------G ACUGGGGUG- AAG-UCGUA- AC-AAGG--- 5281 -U-AGC--CG U--AGGGGAA CCU-G-UGGC UGGAUUGAAU CC........ .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Acyb.aeg_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Agrocybe aegerita str. SM47 (gill mushroom; basidiomycete fungus) -- mitochondrion. REFERENCE 1 AUTHORS Gonzalez,P., Barroso,G. and Labarere,J. TITLE DNA sequence and secondary structure of the mitochondrial small subunit ribosomal RNA coding region including a group-IC2 intron from the cultivated basidiomycete Agrocybe aegerita JOURNAL Gene 184, 55-63 (1997) COMMENT Corresponding GenBank entry: U54637 (bases 650 to 2046) Corresponding GenBank entry: U54637 (bases 3427 to 3926) common_name= gill mushroom; basidiomycete fungus isolate_name= SM47 NB: GB Features table incorrect according to diagram in paper should be (join(650..2046,3418..3926)) 1446-1474n in diagram do not match GB entry BASE COUNT 674 a 253 c 336 g 643 u 3536 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ...UGGAAGA AUUUAA-UUU UGGUUCUGAU -UGAACGUU- UUUCA-GUA- GU-------- 181 ---------- ---------- ---------- ---------- UUUAA-GACA UGC-AA-AUC 241 G-UUA-UU-- ----UU--A- --G------- ---------A AAAAAG---- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ----UAU--A G-AA--UAA- -GGU--GUAA AGGUG--AGU AAU--GAUAA -AUAAGA--- 481 -UAC--CUUA U--CAG-U-C U----UU--- UC-----GAA AUA----GA- ---------G 541 G--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------AUAC UUAUAUAAUA 781 U-AA-AUUA- ---UAUGC-- ---UAAU--- -AUAGCUAAA UUAUGA---A GA--A---AG 841 GAA---U--- UUUUCUA-CU -AUAAG---- -AG---UCGA U-UUA-UUUU GUUU-AAU-- 901 --U------- ---------- ---------- ---GGUAG-U UGGUAGG--- ---------- 961 GUAAAGG--- ---------- CC--UAC-CA -A-GCC-UAC GA--UCAAUA --GCCAA--G 1021 UUU-GAAA-G AACAAAUGGC -CAC-AUU-G GGAAUGAAAA G---CCCCAA AUUGC-UUAA 1081 --GCAA---- -----UCU-G CAGUCAAGAA UAU-U-AGUC AA-UGCUC-- -----GCAAG 1141 A--------- ---GUG-A-- ---ACUA-G- C-UA-ACU-G AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AU-C 1261 AC-AAA---- ----AUCAC- -------UUA AUC------- -GUGGU---- --UAUU-GUG 1321 -AU-AACGUA AG---G---- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- --------GA AAA------- ---AAAUGA- 1501 ---------- ---UAUUA-- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ------C--- --CUUAC--- 1681 -UAUAAGUGU U--GUCUAAA UUA-CUGGUG -CCAGAAGAC UC-GGUAA-C ACCA-GA--- 1741 -AAC-GCG-- AACGUUAGUC -GUCUUAA-A CAGGC-GUAA AG-GGUAAGU A-GGCU---- 1801 ---------- ---------- ------GCU- -----UUAAA U------UUU CUAUUUUU-- 1861 ---------- ---------- ---------- ---------- ---------- ------AAAC 1921 UAAAUUUACU UUUAAGUAAA UAAGCUCUAA AUUUAAUAAA UAAAAAUAAA AUUUUCAACU 1981 CGCAAUCCUC AGGAUUUUUA UGAGAAAAUU AAAUAAAUUU GACCUGUAAU UUUAUUAAGA 2041 UCAGU----- ---------- ---------- ---------- ---------- ------AAAA 2101 AUA-GAAU-A AA------UU AA------AG CUAG--AAU- CAUAAUGGA- G-AUAAACC- 2161 -----AAAU- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- AAUA--CUUA UGUGU-AAG- -GAUGAU--- 2281 AUC-UAAAGA U-ACUA-A-G U-A-GA-AU- ACUA------ ---------- ---------- 2341 ---------- ------AUGG U-GAAA--AC U-UUUUAUC- -UAGUAAUG- --------AU 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CG- CUC--GAG-- -GAA---C-- GAAAGUG-GA 2641 A-UAGGGAA- UAGGAUUAGA UAC--CCACG -UUACCU-CU CACCGUCAAC GAU--GAA-- 2701 ---UG-GU-- -AGU--UAUU A-GU----UU ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- --------AA UAU------- ---------- ---------- 2941 ---------- ---------- ---------- ----AA---- --AUUAGUA- -AC-GAUGU- 3001 ------UAAC ---------- -GCGAU-AAC CAUUCCG-CC UUG-AGAGU- --AC---GGU 3061 U--GCAA-AA CU-GAA-ACC AAAAAAAU-U AGU------C GGUC-UCGGA ---GC-AAA- 3121 -CGAAGUG-A AGCAUGUUAU UUAAU-ACG- AAA-GUACG- --CGUA---- ------AAAU 3181 CUUA--CCAG UUCUUGCAUA UCCAAUCCCU C------UUU UUAGGAUGU- AAUAGUUAUU 3241 ACU-UACUGU UUUUUUUUUU AUUAUUAUUA UA-AUAAUAA UCCAGGGGCA AAUAUUA-UU 3301 AAAUAUUAAA AAGACUGGAU UGAG-UAAU- -UUCUAUUUA AAUUUUUU-- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- -AAUUUUUAA AUUUAUU-AG AA-AUUCGUU UACAGGU-GU 3601 UGCA-UG-GC -U----GUCG -UCA------ GUCC--GU-A UU--GUGA-- -AAAGU---- 3661 ---------- ---------- ---GAGG--- --------UU AACU------ -----CCA-C 3721 -------UA- -AC-GGAC-G AAAU-CCCUG ---------- -----UUGUU AA-------- 3781 ---------- ---UUUAUAC ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- -UUAACUA-- 4321 ---------- ---------- --------UU -GAUGAU-UA UUAAAU--AU UUUC------ 4381 AUU--UGGGG ------CUA- ----A-GA-- C-A----AGU CGUUAU-GGC CCU------- 4441 ---------C AUGA-ACUGG -GCUAU---- ---------- ---------- -----AGACG 4501 UGCUG-CA-- --AAAACUUU UACAAU-GUG ACGCAAAACU UAGC--UUCU GCU------- 4561 ---AAUUGUU AGUUAGAGCU AAAA------ ----GG-UUU A----GCUAA UCAAUAAAAA 4621 AAGUU-AU-- UUUUA-UUAU UUUU------ -------AUA A-A-CGGAU- -UGU--UG-- 4681 ---------- ---------- -CC-UG--GA AUUC--GG-- ---------- ---------- 4741 ------C-A- -ACA-U-G-- AAG-AAGGC- CUU-UCG-AG UA-AU-CGUU G-AUUAG--- 4801 --UAUUG--C A-ACGGU-GA AG-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- --AUUGAA-U CC--GUGA-U GAACUAACU- 4921 GUCU-GUC-G CUGG-GGAGG A---GUU-CC -G-AUU-GGG CCAAAUCCCC U--------- 4981 ----UUAA-- --UA------ --AAU----- -AUGAAG--A ACAAAAG--- ---------- 5041 UAUACACUAU AUUAAAUUUA UAUUAAAAAU AUUUGUUAAA UAUUUUUCUA AUUAUUUUUA 5101 AUUAAGUGUA GUUAUUCUUA UUUGUUACUU AUGUAACUUU AUAUAGUGCA GUUUAACU-- 5161 ---------- CUUUUGUU-G AG------AU U------UA- ----UUAA-- ---------U 5221 AUCGAUUAAC CC-UUCUGAG U--------A ACAUUUCAA- AAG-UCAUA- GC-AAGG--- 5281 -U-AGCUU-G U--ACUGGAA AGUCG-CUGC UGGAAAAUAU AUAUUGAUCC C......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Pyla.lit_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Pylaiella littoralis (brown alga) -- mitochondrion. REFERENCE 1 AUTHORS Markowicz,Y., Loiseaux-de Goer,S. and Mache,R. TITLE Presence of a 16S rRNA pseudogene in the bi-molecular plastid genome of the primitive brown alga Pylaiella littoralis. Evolutionary implications JOURNAL Curr. Genet. 14, 599-608 (1988) COMMENT Corresponding GenBank entry: X14874|g468502 (bases 141 to 1654) common_name= brown alga BASE COUNT 455 a 258 c 398 g 403 u 3928 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... ........UA 121 AUAAAAAUGA GUUUGA-UCC UGGCUCAGAG -UGAAGGCU- AUAAG-UCU- G--------- 181 ---------- ---------- ---------- ---------- CUUGAAUACA UGC-GA-GUC 241 GAAUG-AU-- ---------- ---------- ---------- -UUAG----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- --AU--CAU- -GGC--GUAC GGGUG--AGU AAU--AGACU -CAUAUC--- 481 -UGG--CCCC A---AC-U-C UUG-GAUAA- -----UCCUA UCCC------ U-----CCGG 541 G--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------AGA AAAAAAGGGA AAUACAGGAU AAUUAUAA-- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---GG----- ---------U 841 ACG------- ----CCG-GU -UGGGG---- -AU---GAUU A-GGU-CG-- -AGU-AUU-- 901 --A------- ---------- ---------- ---GGUAG-U UGGUAAG--- ---------- 961 -UAAG----- ---------- CU--UAC-CA -A-GCC-UUU GA--UGCUUA --GUUG---G 1021 UCU-GGGA-G GACGAUCAAU -CAC-ACU-G GGACUGAGAC AAG-GCCCAG GUUUC-AUUU 1081 --GAAG---- -----GCA-G CAGUA-AGGA AUA-UUGCAC AA-UGAGC-- ------GAAA 1141 ---------- ---GCUUG-- --AUGCA-G- C-AA-GAC-U UG-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------GU-G 1261 AG-G---GAU UGA-AGGC-- ---------U UA-------- --GGUU--GU AAA--C-CUC 1321 -UUUUU-UAA CUGAGG---- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ----AUAAUG 1501 A--------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ------CAUU A-AGUUA-AG 1681 -AAUAAGUCC C--GACUAA- C---UUCGUG -CCAGCAGUC GC-GGUAA-U ACGG-AG--- 1741 -GGG-GCA-- AGCCUUAUUC -GUCAUAA-C UGGGC-GUAA AG-GGCCCGU A-GGUU---- 1801 ---------- ---------- ------GCU- -----UUC-- UGU----AAA -GUU------ 1861 AUUU------ -------GUU AA-------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- -----AUAUU 1981 AUAGC----- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- -------UUA AC-------U AUAAAAA--- 2101 GGC-AUUUAA A-ACA---UG AA------AG CUUG--AGU- CUG-ACAGA- G-GGAAAU-- 2161 -----GGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUUU--UUAA --UUA-GGG- -UUAAAC--- 2281 UCC-GGAUAA --GUAA-A-A G-A-GA-AC- AUCA------ ---------- ---------- 2341 ---------- ------GCUG C-GAAA--G- --AUUUCCU- -UGUUCA-GU --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CG- CU---GAG-- -GGG---C-- GAAGGCGUAG 2641 G-UAGCGAA- CAGGAUUUGA GAC--CC-UG -GUAGUC-UA CGCUGUAAAC GAU--GAG-- 2701 ---UG-CU-- -AAU--UUUU --AG------ ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------A AAU------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- --CUAGAAA- -AU-AUAGC- 3001 ---------C AAG------- -GCAUU-AAG CAU--CG-CU GAG-GAGU-- --AC---GAG 3061 C--GCAA-GC UU-AAA-AAU CAACGGAA-U UGG------C GGGG-GUUCA ---AA-CA-- 3121 -AGUGGUG-G AGCAUGUGGU UUAAU-GCG- AUA-AUACG- --CGCG---- ------UAAC 3181 CUUA--CCAG UUCUA----- ---------- -------GU- AA-GUCU--G UC-------- 3241 ---AUUUUUA C--------- --------GA GAC------- ---------- GUAACAA--- 3301 ---------- --A------- -----CUUUG ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- --GGACU-U- U--C------ ---AGGU-GU 3601 UGCA-UG-GC -U----GUCG -UCA------ GCUC--GU-G UC--GUGA-- -GAUGU---- 3661 ---------- ---------- ---AGGG--- --------UU AAUU------ -----CCU-G 3721 -------UA- -ACUGAGC-G CAAC-CCUCG ---------- -----UCUCU UU-UAAG-U- 3781 -UUUGU-AAU AGUUUAUACU AAGUA-AUAA AA-------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- -----C-A-- -GGAGAGA-- 4321 ---------- ---------- -----UACUG -CCAAC---- -GUUG----A GUGG--AGGA 4381 -AG--GUGGG -----AUGA- ----G-GU-- C-A----AGU CUUCAU-GGC CCU------- 4441 ---------U AU-A-ACUGG -GCUAC---- ---------- ---------- -----ACACG 4501 UGCUA-CAAU --GGGAAGG- -ACAAC-GAG -----UU--- --GC----GA G-GGA----- 4561 ---------- -GUAA----- ---------- ---UCC-AAA -----GC--- -----CAAU- 4621 ----C-UU-- AAAACC-UUU UCUU------ ---------A GUU-CGGAU- -UGG--GG-- 4681 ---------- ---------- -GC-UG--CA AUUC--GC-- ---------- ---------- 4741 ------C-C- -CCA-U-G-- AAG-UUGGA- AUC-ACU-AG UA-AU-CGCG A-AUCAG--- 4801 ---GAUG--U C-GCGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -ACGUCAC-U GG--GCCU-U GCACACACC- 4921 GCCC-GUC-A CGUC-CUGGG A---GUU-GA -C-UUG-GCC ------AGAA GAUUU----- 4981 ----AGG--- ------AAUA AACUUUUU-- ---AA----G UU-GAAG--- ---------- 5041 ---------- ---------- ---------- ---------- -------UUU -GAUAAAAAA 5101 AAGCUUUUUU UCU------- ---------- ---------- ---------- ---------- 5161 ---------- UUUCUAAC-G A----AAAAA GAAAGU---- -----CCU-- ---------U 5221 UUGAA----G GACAGGUAAG C--------A ACUGGGAGU- AAG-UCGUA- AC-AAGG--- 5281 -U-AGU--CG U--AGGGGAA CCU-G-CGGC UGGAAAAAUU .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Clmy.eug_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Chlamydomonas eugametos (unicellular green alga) -- mitochondrion. REFERENCE 1 AUTHORS Denovan-Wright,E.M. and Lee,R.W. TITLE Comparative structure and genomic organization of the discontinuous mitochondrial ribosomal RNA genes of Chlamydomonas eugametos and Chlamydomonas reinhardtii JOURNAL J. Mol. Biol. 241, 298-311 (1994) COMMENT Corresponding GenBank entry: L28930|g455443 (bases 246 to 356) Corresponding GenBank entry: L28929|g455445 (bases 1866 to 2123) Corresponding GenBank entry: L28929|g455445 (bases 2800 to 3162) Corresponding GenBank entry: L28931|g455444 (bases 1150 to 1658) common_name= unicellular green alga BASE COUNT 428 a 194 c 269 g 350 u 4201 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... ...AAAUGAA 121 AAAGUAAUGG GUUUGA-UAG UGGCUCUGCA -AGAACGCU- UUAUU-AUG- G--------- 181 ---------- ---------- ---------- --------GA AGUAA-UACA UGC-GA-GUG 241 --AU------ ---------- ---------- ---------- AUAGA----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- -------GU- -AGC--GUAC GGGUG-AGUA GAUU-AUGCG -AGU-UU-AA 481 AUAUA-CCAA UA--GU-AAC UUA------- ------GUAU UA-------- -------UAA 541 G--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --A------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- --------AU UAUUGG---- ------GAAC U-CGC-AU-- -UGG-AUU-- 901 --A------- ---------- ---------- ---GAUAG-A UGGGAA---- ---UGAUGAA 961 UGUAUAUUAU AGC------- -U--UCC-CA -U-GUC--UA A---AACAUA --GUUU---A 1021 AUU-GAUA-G AUUAUUAAAU -CAC-AAU-G GCACUGAAAA AAG-GGCCAU ACAAU-AAAU 1081 --AUUG---- -----UCA-G CAGUA-GAGA AUA-UUGGAC AA-UGUA--- -----AAAAC 1141 A--------- ----UAUG-- --AUCCA-GA G-C--AUA-A UA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------UU-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGUCC U--GGCAAA- U---UCUGUG -CCAGCAGCC GC-GGUAA-G ACAG-AU--- 1741 -AGG-ACA-- AGUGUAUUGC -AUAAUGA-U UGGGU-AU-U -G-CGUGUGA A-AGC----- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ------AUGA CU-------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ------UAU- AAA-GAA-A- A-AGAAUA-- 2161 -----GGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUCU--CCAU --GUA-UUG- -GUAAAA--- 2281 UAA-GCAAAU --AUGG-AUG A-G-GA-AC- GCCA------ ---------- ---------- 2341 ---------- ------AAGG C-AUAA--GC A-UAUUUUG- -AAAAUU-U- --------AU 2401 AU-------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----AA--G- CU---GUA-- -ACA---C-- GGAAGUCCGA 2641 G-UAGCAAA- AAGGAUUAGA GAC--CC-UC -GUAGUU-CG GACCGUCAAU U----GCC-- 2701 ---AU-U--- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ------UUAU AU-------- ---------A AUGGUCA-CC U----GAU-- -GACAC-GGC 3061 G--GCAA-CG CUAUUAA-GU CAAAGUAU-U AGA------C GGAG-AUCAA ---UA-AA-- 3121 -UGCGGUG-G AGCAUGUGGU UUAAU-GCG- ACG-AUCCC- --CGCA---- ------AAAC 3181 CUUA--CCAC UUU------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- -------UUA ACAUUUUAA. 3421 ...AA----- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---GGGC-AU 3601 UGCA-UG-GC -UGAUCAACU GUUU------ UUGG------ ---------- ---------A 3661 UGUUGAUGAC UU-------- ---UGUCGCG UCGCAUGC-A AUU-GUAUGC GACGCGAC-A 3721 UUACACAUUA ----CUGA-- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ------AAA- ----A-GU-- U-ACACAAGU CCUCAU-GGU CCU------- 4441 ---------U AUAG-AGUGG -GCCAC---- ---------- ---------- -----ACAUU 4501 UGCUA-CAAU --GGAUG--- --CUC--GGU ---------- --CGU----- C-GC------ 4561 ---------- -CGCUC---- ---------- ---GC--CA- ----GCG--- ---------- 4621 ----AACC-U AAAAAU---C AUUC------ -------GAA GUC-CAGAU- -UAGA-UA-- 4681 ---------- ---------- -UC-UG--AA ACC---GG-- ---------- ---------- 4741 ------U-A- -CUA-U-U-- AAG-UAGGA- AUC-GCG-AG UA-AU-CGAA A-AUCAGA-- 4801 ---CAAG--U U-UCGGU-GA AGUUAA-AAG AUAUUGUAGA CAUUGACUAU UUCAGAUCCU 4861 GAAAUAGUCG UGGCAUACAU AUCUU-CAUU -AUUUUAG-U UG--AUCU-A GUACUCACU- 4921 GCCC-GUC-A AGUA-CUGAA A---GAA-AU -U-UUG-AUG UGA-----AA ---------- 4981 ----AUAC-- --AU------ ---------- --AAU----U AUC------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- -------AUA 5101 UA-------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ----GAUA-C ACA------- -------AU- ----GUAU-- ---------- 5221 AUA---UAAC UUUAACGUUU U--------A AUUGGUAUU- AAG-UCGUA- AC-AAGG--- 5281 -U-GAC--AC U--AGGGGAA CCU-G-GUGU CGAGAUAGAA AA........ .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Clmy.rei_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Chlamydomonas reinhardtii str. CW-15 (unicellular green alga) -- mitochondrion. REFERENCE 1 AUTHORS Boer,P.H. and Gray,M.W. TITLE Scrambled ribosomal RNA gene pieces in Chlamydomonas reinhardtii mitochondrial DNA JOURNAL Cell 55, 399-411 (1988) COMMENT Corresponding GenBank entry: M25119|g336696 (bases 1 to 115) Corresponding GenBank entry: M25120|g336697 (bases 1 to 217) Corresponding GenBank entry: M25121|g336698 (bases 1 to 410) Corresponding GenBank entry: M25122|g336699 (bases 1 to 458) common_name= unicellular green alga isolate_name= CW-15 BASE COUNT 343 a 252 c 310 g 295 u 4242 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ..AAAUUAGA GUUUGG-UGC UGGCUCAGCU -UUCAUGCGC CGAGC-GGU- G--------- 181 ---------- ---------- ---------- ---------- GUUUA-UACA UGC-GA-GCU 241 --U------- ---------- ---------- ---------- ---------- --------AA 301 AAGAUUAAGG CCACGAGUGC GUAAUACGCG AGUU-UAAAU UUAUUAUACA A--------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- --------A- -AGU--UGCU AGGUG--ACC CA---AUACG -GG------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --CAUCGG-- 781 ---------- ---------- ---------- ----GCAAAA ---------- ---------- 841 ---------- ---------- ---------- ---------C U-CGC-GU-- -AGG-AUU-- 901 --A------- ---------- ---------- ---GCGAG-C UGGGUCG--- -------CGA 961 CGCCAAUACA G--------- CG--GCC-CA -U-GGC--UU A---UCCUUA --GCCU---G 1021 UCU-UAAC-G GUACU-AGGC -CAC-GGU-G GCACUGAAAA GG--GGCCAC GGUUC-UUAU 1081 --GAAC---- -----CCA-G CAGUG-UUGA AUU-UUGGAC AA-UCGCU-- -----UGAAC 1141 ---------- ---GGCGG-- --AUCCA-GA U-G--CUG-C UU-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AC-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- AAA-AUUGUU UGU------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ----GAACAC C--CCCCAA- G---CACGUG -CCAGAAGGG UC-GGUAA-A ACGU-GC--- 1741 -GGU-GUC-- AGUAUAAAGC -GUCUUGA-C UAGGC-AGGC AG-CGCGUCU --GAGC---- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ------GUUA AUGGUGAAC- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ACU-UUAAA- C-GUUGG--- 2161 -----GUAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UAUU--CGGA --GGA-UCG- -GUCAAA--- 2281 UGA-GAAUAU --UCCG-G-A U-G-GA-AA- GCCG------ ---------- ---------- 2341 ---------- ------AAGG C-GAAA--GC A--CCAACA- -UCAGAG-U- ---------- 2401 -CACUAAA-- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- -------GC- UU----CA-- -ACG---C-- GUAAGUUUGG 2641 G-UAGCGAA- CCGGAUUAGA GAC--CC-GC AGUAGUC-CA AACCGUCAAC ACA--UUA-- 2701 ---UA-G--- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ------UUUU CAAAU----- ---------C UAUAACG-CC UGG-UGAU-- --AC---GGU 3061 G--GCAA-CA CU-AUA-AAU CAAAGCAA-U UGG------C AGCG-AUAGA ---GA-UG-- 3121 -CGCGGUG-G AAUAUGCUGU UUAAA-UCG- AAU-UUACG- --CGCA---- ------AAAU 3181 CUUA--CCAC UUU------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- -------UUA UUA....AAA 3421 U--------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCU-CU 3601 UGCA-UU-GC -U-------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- --GAAAAGUU CGAGCGGGAC CUCGCCCUUA 3841 GUGCCGGUCU UUGCCACGUU UUCUGAACGG UCGAGCA--- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- -------AGU CAUCAU-GGG GCU------- 4441 ---------U AUAG-AGUGG -GCUAC---- ---------- ---------- -----AGGCG 4501 UAUUA-CA-- --UUGGACA- ---------- ---------- ---------- ---------- 4561 ---CCCACAA GUUGGAUACC AAAAC----- ---------- ---------- ---------- 4621 ---------- -------UGU CCGA------ --------AU AUA-CGGAU- -UGG--AG-U 4681 AGCAAAACGA GAGAACUAUA CAG-----UU CGU---UUGC AUCGUUAUGC CUUGCUGAAA 4741 CUAGC-C-U- -CCA-U-G-- AAG-AAGGA- AUC-GCG-AG UA-AU-CGUA G-AUCAUU-- 4801 ---AGCG--C U-ACGGU-GA AG-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- --GUAACC-U CU--AUUG-U GCACACAUU- 4921 GCCC-GUC-A CCUC-CGAUA A---UAG-UA -U-UGU-ACA ------GGAA GAA------- 4981 ----CUA--- ---------U --GGCU---- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---ACACUUA 5101 AGUCGC---- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- -------GGC C--------- -----UAG-- --------GA 5221 ACGUA----U GCGUGAUAUU A--------G AGUUGGAGU- AAG-UCGUA- AC--AGG--- 5281 -U-UGG--GG U--AGGGGAA CCU-G-CUCC AGAGUCAAAU UUAUAUAA.. .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Clra.sp_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Chlorarachnion sp. CCMP 621 (amoeboflagellate) -- mitochondrion. REFERENCE 1 AUTHORS Gilson,R., Waller,R. and McFadden,G. TITLE Preliminary characterisation of Chlorarachniophyte mitochondrial DNA JOURNAL J. Eukaryot. Microbiol. 42, 696-701 (1995) COMMENT Corresponding GenBank entry: U36908|g1040983 (bases 572 to 1911) common_name= amoeboflagellate BASE COUNT 372 a 283 c 389 g 295 u 4103 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ..UAUACCGG GUUUGA-UCC UGGCUCAGAG -UGAACGCU- AGGGG-UAC- G--------- 181 ---------- ---------- ---------- ---------- CAUAA-CACA UGC-GA-GUC 241 -AACG----- ---------- ---------- ---------- --UAU----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ------CGU- -GGC--GAAC GGGUG--AKU ACA--GCAGG -CAAUUA--- 481 -CGC--CCGG U---AG-C-C CAG-A----- ------AUAA AU-------- ------UCUG 541 G--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --A------- 781 ---------- ---UAAA--- ---------- ----AA---- ---GAU---- ---------U 841 A--------- ---AUCG-UU -GCCGG---- -AU---AUGU C-UGU-GU-- -AGG-AUU-- 901 --A------- ---------- ---------- ---GAUAA-U C--------- ---------- 961 GUAGA----- ---------- ---------G -A-GUC-GAU GA--UCCUUA --GUUGA--A 1021 UCU-GGGAAG GAUGCACAGC -CAC-AUU-G GAACUGAGAC AAG-GUCCAA GCUCC-AGUA 1081 --GGAG---- -----GCA-G CAGUG-AGGA AUA-UUGGGC AA-UGGGC-- ------GAAA 1141 ---------- ---GCCUG-- --ACCCA-A- C-GA-UAC-C CC-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------GU-G 1261 AU-U---GAA GAA-GACC-- -------AA- ---------- --GGUC--GU AAA--G-GUA 1321 -CGCGG-UCA GUAAAG---- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ----AUUACG 1501 A--------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ------CGGU A-ACUGG-CC 1681 -AAAAAGCCC C--GGCUAA- C---UCCGUG -CCAGCAGCC GC-GGUAA-U ACGG-GG--- 1741 -GGG-GCA-- AGUGUUAUUC -GCAAUGA-C UGGGC-GUAA AG-CGUGCGU A-GGCG---- 1801 ---------- ---------- ------GCU- -----UGC-A AUU----AGC CCUUUUGCGA 1861 AAGC------ -------UAG GG-------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- -------CUC 1981 AA-------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- -------CCU UA-------- --GU-G--UG 2101 A-----CU-U UUGGCACA-G CA------AG CUAG--AGU- UUG-GUAGG- G-GUUGGU-- 2161 -----AGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUCU--CAGA --AGA-GGG- -GUACAA--- 2281 UCC-AGGGAC --ACUG-A-G A-C-GA-AU- ACCU------ ---------- ---------- 2341 ---------- ------AGGG C-GAAG--GC A-GCCAACU- -GGACCAU-- --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CG- CU---AAA-- -GCA---C-- GGAAGCGUAG 2641 G-UAGCAAA- UAGGAUUAGA UAC--CC-UA -GUAGUC-UA CGCCGUCAAC GAU--GGG-- 2701 ---UA-UU-- -GGC--AAU- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------U AA-------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ------AUU- -GC-UAAGC- 3001 ------UAAC ---------- -GCGUU-AAA UACCCCG-CC UGG-GGAGU- --AC---GGU 3061 C--GCAA-GA UU-AAA-ACU UAAAGGAA-U UGA------C GGGA-GCUUG ---CG-CA-- 3121 -AGCGGUG-G GGCAUGCGGU UUAAU-CCG- AUA-UUACA- --CGUA---- ------AAAU 3181 CUUA--CCAA CCCUUGAACA AAC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGGU-GU 3601 UGCA-UG-GC -U----GUCG -UCA------ GCCC--GU-G UC--GUAA-- -GAUGU---- 3661 ---------- ---------- ---UUGG--- --------UU AACU------ -----CCU-U 3721 -------UA- -AC-GGGC-G UAAC-CCCUC ---------- -----UC--- ---------- 3781 ---------- ----UUCG-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ------GA-- 4321 ---------- ---------- -----GCAC- -CG------- -CUGU----- --UG-AAAUA 4381 ACA--GGGGG AGGUAGGGA- -UCAC-GC-- C-A----AGU CGUCAU-GGC CCU------- 4441 ---------G AUGG-GUUGG -GCUAC---- ---------- ---------- -----ACAUG 4501 UGUCA-CAUA --GUUGCAU- -ACAGC-GAG -----AG--- --GC----AA AGAC------ 4561 ---------- -AAAA----- ---------- ---GUC-GGA -----GC--- -----AAU-- 4621 ----C-UA-- -UAAC--GUG CAAC------ -------CCA GUU-CGGAU- -UAU--CU-- 4681 ---------- ---------- -CC-UG--CA ACUC--GG-- ---------- ---------- 4741 ------A-G- -AUA-U-G-- AAG-GCGUA- AUC-GCU-AG UA-AU-CGCG U-AUCAU--- 4801 ---AAUG--G C-GCGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -ACGUGAU-C AA--GCUU-U GUACACACC- 4921 GGCC-GUC-A CGAC-CGGAA A---GUC-AG -C-UUU-GCU ---------U ---------- 4981 ----GAAU-- --GG---UUC G-CAGU---- ---GAU---C GCUU------ ---------- 5041 ---------- ---------- ---------- ---------- ---------- ------GCUU 5101 CGUG------ ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---AAGCG-U A------ACU G------UC- ------UC-- ---------U 5221 UGAU-----A GUAGGGUCGA U--------G AUCGGGGCG- AAG-UCGUA- AC-AGGG--- 5281 -U-AGC--UG U--AGGGGAA CCU-G-UAGC UGGAGAAAA. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Prth.wi2_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Prototheca wickerhamii SAG 263-11 (colorless unicellular alga) -- mitochondrion. REFERENCE 1 AUTHORS Wolff,G. and Kueck,U. TITLE The structural analysis of the mitochondrial SSUrRNA implies a close phylogenetic relationship between mitochondria from plants and from the heterotrophic alga Prototheca wickerhamii JOURNAL Curr. Genet. 17, 347-351 (1990) COMMENT Corresponding GenBank entry: X15435|g13446 (bases 70 to 1749) common_name= colorless unicellular alga BASE COUNT 542 a 267 c 379 g 492 u 3762 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .........A 121 AUUAUAUUGA GUUUGA-UCC UGGCUCAGAA -UGAACGCU- AGCCG-UAG- G--------- 181 ---------- ---------- ---------- ---------- CUUAA-CACA UGC-AA-GUU 241 GUACG-UU-- ----UUU-U- -AU------- ---------- -AAAU----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ----AUA-GA A-AA--AGU- -AGC--GAAC GGGUG--AGU AAC--GCGUG -AGAAUC--- 481 -UGC--CUCU U---AA-A-C UGC-GGAAUA AC-----AUU AC-----GUU AGAAU-CGUG 541 G--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------AUA AGUA------ ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------UU 781 UUAUGUUAUA ---UUUA--- --UAUAAAAU AAAGUAUAAA ---GAA---U ---------- 841 AAU------- --AUUCG-UU -AAGAG---- -AU---GAGC U-UGC-GU-- -AAG-AUU-- 901 --A------- ---------- ---------- ---GGUAG-U UGGUAAG--- ---------- 961 GUAAAGG--- ---------- CU--UAC-CA -A-GCC-AAA GA--UCUUUA --GCUG---G 1021 UUU-GAGA-G AAUGAUCAGC -CAC-AUU-G GGACUGAGAC ACG-GCCCAA AUACU-UUAG 1081 --AGUA---- -----GCA-G CAGUG-GGGA AUA-UUGGAC AA-UGGGC-- ------GCAA 1141 ---------- ---GCCUG-- --AUCCA-G- C-UA-UAC-G GC-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AU-G 1261 AG-U---GUA GAA-GACU-- --------GU AUU------- --GGUU--GU AAA--G-CUC 1321 -UUCGG-UGA UAUAUUUUUA ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ----GAUUAU UUAUAAUUUU 1501 AAAGAGCAGA G--------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- AUUAUGACAA CGUAUCA-UC 1681 -AAAAAGUCC C--GGCUAA- U---CUCGUG -CCAGCAGCC GC-GGUAA-U ACGA-GA--- 1741 -GGG-GCG-- AGCGUUAUUC -GGAAUGA-U UGGGC-GUAA AG-CGUGCGU A-GAUU---- 1801 ---------- ---------- ------GUU- -----AGAA- -UG----GA- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ------UUUC UAUAUAAAAA UCAAGGCAAC ACCUUGAUAG AUAGAAAAGC AUUAGUUUUA 1981 UAAAAAUUAA UAAUUAAUAG AUGUAAUUUA UAAUAAUAAG UUAUAUUUAU GUUU------ 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ------UC-- --CA----UC CA------AA CUUG--AGU- AUU-UAUUA- G-GAGAGU-- 2161 -----AGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUCC--UGGA --GUA-GAG- -GUAAAA--- 2281 UUU-GUUGAU --CUCA-G-G A-G-GA-AU- ACCU------ ---------- ---------- 2341 ---------- ------AAAG C-GAAA--GC --AGCUCUC- -UAGUAAAAC --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CA- UU---GAG-- -GCA---C-- GAAAGCGUGG 2641 G-UAGCGAA- AAGGAUUAGA UAC--CC-UU -GUAGUC-CA CGCCGUCAAC UAU--GAU-- 2701 ---CU-UU-- -UUC--UAUU UUCC----CU U--------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- --------GC AAG------- ---------- ---------- 2941 ---------- ---------- ---------- ---GGG---- --GGAAGUG- -GA-GUAGC- 3001 ------UAAC ---------- -GCGUU-AAA AGAUCCG-CC UGA-GGAGU- --AC---GGU 3061 C--GCAA-GA UU-AAA-ACU CAAAGGAA-U AGA------C GGGG-ACCCG ---CA-CA-- 3121 -AGUGGUG-G AAUAUGCGGU UUAAU-UCG- AAA-CAACG- --CGCA---- ------AAAC 3181 CUUA--CCAG UCCUUGAU-- ---------- -------AUG -A-CAC---- UU-------- 3241 ----AUAGU- ---U------ --------AA AAU------- ---------- --GUUAU--- 3301 -------CGU ---------- -----UUUAU ---------- -----ACU-- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---UUGU-GU UA-C------ ---AGGU-GU 3601 UGCA-UG-GC -U----GUCG -UCG------ GUUC--GU-G CC--GUAA-- -GGCGU---- 3661 ---------- ---------- ---UGGA--- --------UU AAUU------ -----UCU-U 3721 -------UA- -AC-GAAC-G AAAC-CCCUG ---------- -----UUAUC AA-UUGC-UA 3781 AGAUUACUAA AAAC-AAU-G UUUUUAG-AU CA-------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- -----GAACU -UUGAUAU-- 4321 ---------- ---------- -----UACUG -CCAGU---- GAUAA----A CUGG--AGGA 4381 AGG--AAGGG -----AUUA- ----C-GU-- C-A----AGU CUUCAU-GAC CCU------- 4441 ---------C AUGG-GCUGG -GCUAC---- ---------- ---------- -----ACGUG 4501 UAUUA-CAAU --GGCGAAU- -ACAAA-AAG -----AU--- --GC----AA UGAU------ 4561 ---------- -GAGA----- ---------- ---AUC-GGA -----GC--- -----AAAU- 4621 ----C-U--- AUAAA--AUU CGUC------ -------UCA GUA-CAGAU- -UGU--UU-- 4681 ---------- ---------- -UC-UG--CA AUUC--GA-- ---------- ---------- 4741 ------A-A- -ACA-U-C-- AAG-AAGGA- AUC-ACU-AG UA-AU-CGUG G-AUCAG--- 4801 ---CACG--C C-ACGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -CAGUACU-C GG--GUCU-U GUACUCCCC- 4921 GCCC-GUC-A CACU-CUGGG A---AUC-GA -G-UAG-AUU -------GUA A--------- 4981 ----GUCU-- --GU-----A --UUUC---- ACUUUU---U UUCUA----- ---------- 5041 ---------- ---------- ---------- --------UU CUUUAGAAAU -AAUAAUAAG 5101 UUCUGAUGAA UUUAUUAAAU A--------- ---------- ---------- ---------- 5161 ---------- --UAGAAAUU UA-----GAA A------AU- ----AUAC-- ---------C 5221 CAG------A AUUUAUUUGG U--------A ACUGGAGUG- AAG-UCGUA- AC-AAGG--- 5281 -U-AAC--CG U--AGGGGAA CCU-G-CGGU UGGAUUACUU CUUUUUUUAC .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Tryp.bru_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Trypanosoma brucei (African trypanosome) -- kinetoplast. REFERENCE 1 AUTHORS Sloof,P., Van den Burg,J., Voogd,A., Benne,R., Agostinelli,M., Borst,P., Gutell,R. and Noller,H.F. TITLE Further characterization of the extremely small mitochondrial ribosomal RNAs from trypanosomes: a detailed comparison of the 9S and 12S RNAs from Crithidia fasciculata and Trypanosoma brucei brucei with rRNAs from other organisms JOURNAL Nucleic Acids Res. 13, 4171-4190 (1985) COMMENT Corresponding GenBank entry: X02547|g13740 (bases 1189 to 1799) common_name= African trypanosome NB: 9S is the small; 12S rRNA is the large subunit BASE COUNT 249 a 35 c 68 g 259 u 4831 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ......UAAA UUAUGGUCAA UUGUUAGUAU -UCAUAUU-- -AAUU-UUU- U--------- 181 ---------- ---------- ---------- ---------- UAAAU-GUUU UAU------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ------CAUU UUAUA--AAG GUU--UAUUU -UUG-AA--- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------AG 781 AU-------- ---UUUUU-- ---------- GUAU------ ---------- ---------- 841 ---------- ---------- --------AA AAU---UUUA G-GAA-UA-G UUAA-UAA-- 901 --U------- ---------- ---------- ---AAUUU-A U--------- ---------- 961 --AAU----- ---------- ---------U -UUGAU--UA G---AUUGUU UUGU------ 1021 ----UAAU-- --------GC -UAU-U---- ---------- ---------- AGAUG-GGUG 1081 --UGGA---- -----AAA-A UAAAA-AAAA UAA-UUAAU- ---------- ------AUAU 1141 ---------- ---------- ---AUCA-AU A-AU--AA-A UU-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- -------A-A 1261 AU-------- ---------- -------UAA UCU------- ---------- -------AUU 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 --------AG U---CAGAA- A---UGGAUG -CCAGCCGUU GC-GGUAA-U UUCU-AU--- 1741 -GCU---UUU AAAUAUUAUA ---CAAU--- -UAUC-AU-- -A-UUAAAUU G-UUAA---- 1801 ---------- ---------- ------GUGC UGA--UUUA- -------ACC AAUAA----- 1861 ---------- -------AAA U--------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ------AUAA 1981 AUA------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- --------AU UU-------- ---------U 2101 UAU-UUGU-U UU------UA AA------CA CCAUU-AGG- UAU-AU-GC- --A--AAU-- 2161 -----AUAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- AAUU--AUA- --GUA-AUU- --AUA----- 2281 AAU------- ---UAU-A-U U-A-UA-UU- AUA------- ---------- ---------- 2341 ---------- ------UUUA U-UCAU--AU A-AUUAAUA- -GGAUA--A- --------UA 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----UU-GU- AG----UU-- -UUU---G-- AUACCAUGAU 2641 A--AGGAUU- AUA-AAUUGA AAG---U-GU -UAAU-A-UC AU-AAUCAAA AUU------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 --------UA UUAU------ ---------- -----UU-AU A--------- ---------- 3061 ---UUAA--- ---------- --AUAUGU-- AUG------U GU-------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---AGAUAAA AUAAGAAAUU AAAA------ ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------A GGUAUUGUU- 4921 GCCC-ACC-A AUUU-UUA-- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- --------UA 5101 A--------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- --UAAAAAU- AAC-GUGCA- GU--AAU--- 5281 -U-AAU--AU A--UUUAUAA AAA-U-AUAU U......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Dict.dis_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Dictyostelium discoideum str. AX3 (cellular slime mold) -- mitochondrion. REFERENCE 1 AUTHORS Angata,K., Kuroe,K., Yanagisawa,K. and Tanaka,Y. TITLE Codon usage, genetic code and phylogeny of Dictyostelium discoideum mitochondrial DNA as deduced from a 7.3-kb region JOURNAL Curr. Genet. 27, 249-256 (1995) COMMENT Corresponding GenBank entry: D16466 (bases 8602 to 10152) common_name= cellular slime mold isolate_name= AX3 BASE COUNT 573 a 218 c 366 g 394 u 3891 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......AAG 121 AAAAAAAUGA GUUUGA-UUC UGGCUCCGAA -UGAAUGCU- AUCAG-UGG- G--------- 181 ---------- ---------- ---------- ---------- CUUUA-UACA UGC-AA-GUU 241 GAACG-CU-- ----AUU--- ---------- ---------- -GAAA----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 --------AA U-AG--AGU- -AGC--AAAA AGGUG--AGU AAU--GCAUA -UGAAUU--- 481 -UUA--AUAA U---AA-U-U UUG-GGAAU- ------AAAA GAA------- GAAAU-CCAG 541 A--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --AUAAAA-- 781 ---------- ---------- ---------- ----AGAAA- ---GAGGAA- CU--UG--AA 841 AAA--CAGUA AGACUCG-UU -AUUAU---- -AA---AAGC G-UAU-GU-- -CGA-AUU-- 901 --A------- ---------- ---------- ---GGCAG-U UGGUGGG--- ---------- 961 GUAAAGG--- ---------- CU--UAC-CA -A-ACC-UGA GA--UUCGUA --GGUG---G 1021 UUC-GAGA-G AAUGAUCAUC -CAC-AUU-G GUAUUGAAAG AAC-GACCAA ACUCU-GAAG 1081 --AGGC---- -------U-G CAGUA-AGGA AUA-UUGGAC AA-UGAGC-- ------GCAA 1141 ---------- ---GCUUG-- --AUCCA-G- C-UA-CAC-U GA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------GU-G 1261 AG-G---GAA GAA-GU---- ---------A AA-------- ----GC--GU AAA--C-CUC 1321 -UUUUAAUAA GG-------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------A AGAUAAUGAC 1501 AAAAA----- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ----UUAAAG 1681 -AAGAAGUCC C--GGCUAA- U---UUCGUG -CCAGCCGCC GC-GGUAA-U ACGG-AG--- 1741 -GGG-GCA-- AGCAUUAUUC -GUAAGGA-U UGGGC-GUAA AG-GGUGCGU A-GGCU---- 1801 ---------- ---------- ------GGU- -----UCUCA AAGG---UAU UAUAUG--A- 1861 AAAA------ -------CAC UGA------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- -------AAA 1981 AA-------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ------GAGG UG-------- -UGG-G--UA 2101 UAA-AAAC-A A-AC---AAA GA------AC CUAG--AGU- AAA-GAUGA- U-GUAUUU-- 2161 -----AGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- GAAC--UAAU --CUA-GAG- -GUAAAA--- 2281 UUCAAUUUAG --AUUA-G-U U-U-GA-CU- GACAG----- ---------- ---------- 2341 ---------- ------UUGG C-GAAG--GC A-AAAUACA- -AG-CAA-U- --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CG- CU---AAA-- -GCA---C-- GAAGGUUCAG 2641 G-GAGCAAA- UCGGAUUAGA GAC--CC-GA -GUAGUC-UG AACAGUAAAC GAU--GAG-- 2701 ---UG-UU-- -CAA--UAUU ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- --------CU AAAA------ ---------- ---------- 2941 ---------- ---------- ---------- ---------- -----AGUA- -UU-UGAGU- 3001 ------UAAC ---------- -ACGUU-AAA CACUCCG-CC U----GAG-- UAGUAC-GAU 3061 C--GCAA-GA UUGAAA--CU CAAGGUAA-U UGA------C GGAA-CUUUG ---CG-CA-- 3121 -AGCAGUG-G AUUAUGUUCA UUAAU-UUG- AUA-CAACA- --CGAA---- ------AAAU 3181 CUUA--CCCU CCAUUGAA-- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- -------UGA CAUAUAUAAA 3421 ACAUGAAACA AAUGUGAAGA AUAGAAGCAG ACAAGGUUCU AUUAAAAUAA AUGUCUAAC- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGGU-GU 3601 UGCA-UG-GC -U----GUCG -UCA------ GUUC--GU-G CU--GUGA-- -GGUGU---- 3661 ---------- ---------- ---AACA--- --------UU AAGU------ -----UGU-G 3721 -------AA- -AC-GAAC-G AAAU-CCUUA ---------- -----AGUUC AA-UUAC--- 3781 -GAU------ ---AUAUA-- --------AU C--------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- -----GAGAA -AUGGACA-- 4321 ---------- ---------- -----GAAGA -GUGUGACAU AAAUUAAAUC ACAU--UGGU 4381 AGU--UGAGG -----AAGA- ----U-GU-- C-A----AGU CAGUAU-GGC CCU------- 4441 ---------U AUAG-GAGGG -GCUUG---- ---------- ---------- -----AAAUG 4501 UAAUA-CAAU --GG-UUUC- UACAAA-AGG -----AA--- --GC----GA AAGU------ 4561 ---------- -GCAA----- ---------- ---GCU-GGA -----GC--- -----AAAA- 4621 ----C-CU-- AAAAA--GAA AUCU------ --------UA GUU-UGGAU- -UUA--UU-- 4681 ---------- ---------- -UC-UG--CA ACUC--GA-- ---------- ---------- 4741 ------A-A- -UAA-U-G-- AAA-GCGGA- AUU-GCU-AG UA-AU-CGUA G-AUCAU--- 4801 ---AAGG--C U-UCGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- --AGUUGU-C AA--AGUU-A GUACAUACC- 4921 GCCC-GUC-A CACC-ACGGA A---AUC-AA -U-CUU-UUU -------CA- ---------- 4981 ----GAUA-- C-AUUA-UUA UGUUAAUU-- ---------- ---------- ---------- 5041 ---------- ---------- --------AU CUAAAGUUCU UAGGGUAUAA -CAGUCUCUU 5101 UUGAAGAGCA AUUAGAAUGG AGGAGGUU-- ---------- ---------- ---------- 5161 ---------- ---------- -----AAUUG U----UAAU- ----UAUC-- ---------- 5221 GAA------C AAUAGAGGGG U--------A ACUGGGGUA- AAG-UCGUA- AC-ACGG--- 5281 -U-AGC--UG U--UGGGGAA CCA-G-UAGC UGGAAGUA.. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Acnt.cas_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Acanthamoeba castellanii (amoeba) -- mitochondrion. REFERENCE 1 AUTHORS Lonergan,K.M. and Gray,M.W. TITLE The ribosomal RNA gene region in Acanthamoeba castellanii mitochondrial DNA. A case of evolutionary transfer of introns between mitochondria and plastids? JOURNAL J. Mol. Biol. 239, 476-499 (1994) COMMENT Corresponding GenBank entry: U03732|g495327 (bases 6184 to 7724) common_name= amoeba BASE COUNT 493 a 223 c 356 g 469 u 3901 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .UUGUAUAAA 121 CAAUCGUUGG GUUUUA-UUC UGGCUCCGAG -UGAACGCU- GGUAA-CAU- AU-------- 181 ---------- ---------- ---------- ---------- UUUAA-CACA UGC-AA-AUC 241 GAACG-AA-- ----AAG-U- -A-------- ---------- -AAUU----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 -----UA-CU U-UA--AGU- -GGU--GACC UGGUG--AGU AGU--AUAGG -AGAAUU--- 481 -GAA--GUGU G---GG-U-- UAG-G----- ------CUAA AUU------- ------CCUA 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --AAAUU-AU 781 U--------- ----AAA--- ---------- -AAU-AAAA- ---GAU---- ---------U 841 UAU------- ---AUCG-CC -UACAA---- -UA---GAGC U-UCU-AA-- -AGG-AUU-- 901 --A------- ---------- ---------- ---GGUAG-U UGUUGUA--- ---------- 961 GUAAUUA--- ---------- UU--CAA-CA -A-GCC-GAC GA--UGCUUA --GCUG---G 1021 UUU-GAGA-G AAUGAUCAGC -CAC-AUU-G GGACUGAAA- ACG-GCCCAA GUCUU-CUAA 1081 --AAGG---- -----GCA-G CAGUG-GAGA AUA-UUUGAC AA-UGGGC-- ------GAAA 1141 ---------- ---GCUUG-- --AUCGA-G- U-AA-UGU-U AC-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------GU-G 1261 GG-U-GAUCA GAA-GGCU-- --------UA AU-------- --UGCC--GU AAA--A-CUC 1321 GUUUCG-UCA AG-------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- --------GA UUAUAAUGCA 1501 AUCGUA---- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- --CUUGA-AG 1681 -GAGAAGCCC U--GACUAA- C---UUCGUG -CCAGCAGUC GC-GGUAA-U ACGG-AG--- 1741 -AGG-GCG-- AGUGUUAUUC -GCAUUGA-C UGGGU-GUAA AG-GGUGCGU A-GGUG---- 1801 ---------- ---------- ------GUU- -----UGUU- AAG----UUU CAAAGU--A- 1861 AAUG------ -------UUA AAC------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- -------AUA 1981 AA-------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ------GUUU AA-------- --AG----GC 2101 UUU-UUAA-U A-CU----AA CA------GA CUAG--AGU- UUA-UUAGA- A-GAUAGC-- 2161 -----UGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- CAUU--AAGU --GUA-AAG- -GUGAAA--- 2281 UUU-UUCGAU --AUUU-A-A A-G-GA-CA- UGCAA----- ---------- ---------- 2341 ---------- ------UAGG C-GAAG--GC U-GCUAUCU- -AUUUUAAU- --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CA- CU---GAG-- -GCA---C-- AAAAGCAUAG 2641 G-GAUCAAA- CAGGAUUAGA GAC--CC-UG -GUAGUC-UA UGCCCUGACC GAU--GAA-- 2701 ---UA-UU-- -GAU--UAUA C-U------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- --------GC GA-------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---GGUGUA- -AU-UAAGC- 3001 ------UAAC ---------- -GCGU--AAA UAUUCCA-CC UGA-GUACU- --AC---GAC 3061 C--GCAA-GG UU-AAA-ACU CAAAGAAA-C UGA------C GGAA-GAUUG ---UA-UA-- 3121 -AGCGGUG-G AGUAUGUGGU UUAAU-UUG- AUA-UAACG- --CAAA---- ------GAAU 3181 CUUA--CCAA CCCUUGA--- ---------- -------AUA CA-AGU---- -U-------- 3241 ----AUUUUA G-CU------ --------GU GAU------- --------A- AUGGAAU--- 3301 ---------- ---------- ---------- ---------- ---------- -------UUA 3361 U--------- UUUCAUUCUC ---------- AUAA------ -------G-C UCAUUA-UAA 3421 GGAUCACC-U GAGGAG-GUG U-AUC-AUAU UG-------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---ACUU-G- UA-C------ ---AGGU-GC 3601 UGCA-UG-GU -U----GUCG -GCA------ GUUC--GU-G UU--GUGA-- -AAUGU---- 3661 ---------- ---------- ---UUUG--- --------UU AAUU------ -----CAU-U 3721 -------UA- -AC-GGAC-G UAAC-CUUCA ---------- -----GCUUU AU-U--U-G- 3781 -UU------- ----UUU--- ---------G AA-------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- -----A--AA -AUAGAGC-- 4321 ---------- ---------- -----AAUAU -UAAUU---- -UGAA----A AUUA---AUU 4381 GAG--AGGAG -----AAGA- ----A-GU-- C-A----AAU CAUUAU-GGC CUA------- 4441 ---------U AUAG-GUUGG -GCUAC---- ---------- ---------- -----ACACG 4501 UACUA-CAAU --GGUAAUU- -ACAAU-GUG -----AA--- --GC----GA AAAU------ 4561 ---------- -GCGA----- ---------- ---GUU-UUA -----GC--- -----UAAU- 4621 ----C-AU-- UAAAA--AUU AAUC------ -------UUA GUU-CUGAU- -UAC--UC-- 4681 ---------- ---------- -UC-UG--UA AGUC--GA-- ---------- ---------- 4741 ------G-A- -GUA-U-G-- AAG-UAGGA- AUC-GCU-AG UA-AU-CGCA G-AAUAG--- 4801 ---AAUG--U U-GCGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AUAUUCU-C AA--UCUU-U GUACACACC- 4921 GCCC-GUC-A CGCC-AUGGG A---AUU-GG -U-UUG-AUU -------AGA A----GUGG- 4981 UAUAGGCU-- --CAGAU--U C-UGAUG--- ----U----C UUUUAA---- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ------UUUU 5101 UU-------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- -UU-AAAG-- U-----UAUC G--C-AUCUU ----GGUACU AA-UUAC--- 5221 GAC------A AUUAGAUUAA G--------G ACUGGGGUG- AAG-UCGUA- AC-AAGG--- 5281 -U-AGC--GG U--AGGGGAA CCU-G-CUGC UGGACAAAAU UUU....... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Phys.pce_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Physarum polycephalum str. M3C (acellular slime mold) -- mitochondrion. REFERENCE 1 AUTHORS Mahendran,R., Spottswood,M.S., Ghate,A., Ling,M., Jeng,K. and Miller,D.L. TITLE Editing of the mitochondrial small subunit rRNA in Physarum polycephalum JOURNAL EMBO J. 13, 232-240 (1994) COMMENT Corresponding GenBank entry: X75592|g414783 legacy_attribute= cDNA sequence legacy_attribute= clone pSSU common_name= acellular slime mold isolate_name= M3C BASE COUNT 558 a 324 c 418 g 561 u 3581 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... ..GUUUUAAU 121 AUAAUAAUGA GUUUGA-UCC UGGCUCCGAG -AGAAUGCU- AGCAA-CUU- A--------- 181 ---------- ---------- ---------- ---------- CUUGA-UACA UGC-UA-GUC 241 GAACG-CU-- ----U----- ---------- ---------- -AUAU----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- G-AG--CGU- -GGC--GUAC GAGCG--ACA AGG--GCAAA -GAU-----A 481 GAAAA-UACA UCAGUCA--A GG-------- -------GAA AU-------- --------CC 541 U--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --A-----GA 781 UUU------- ----AAA--- ---------A GAUUAUAUCG --C------- ---------- 841 ---------- -------UGA -AUGUA---- -AG-----GU C-UUU-GU-- -GAG-AUU-- 901 --A------- ---------- ---------- ---GGUUG-U UGGUAAG--- ---------- 961 AUAAAAG--- ---------- CC--UAC-CA -A-GCC-GAU GA--UCUCUA --GCUG---G 1021 UCU-GAGA-G GAUGUACAGC -CGC-GUC-G GAAAUGCAAU AAG-GUCCGG ACUCC-CUCG 1081 --GGAG---- -----GCU-G CAGUA-GGGA AUC-GUGAAC AA-UGUGC-- ------UAAC 1141 ---------- ---GCUUG-- --AUUCU-A- U-AA-UGU-U GC-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------GU-G 1261 GG-G---GAU ACA-AAAA-- -------ACA UUA------- --UUUU--AU ACU--U--AU 1321 ---------- ---------- UGUUUUAUAA ACAAAUUUAU AUAUAAAAUA GUGAUAAUUC 1381 UAGCAACGAC UUAAGCGCAA UAAAAGUUUC CGUAAAAAGA GAUUUUUAUC UGUGUCUUCU 1441 GUAGCGUGCC UUUCUAGUAG ACGGCAAGUU GUCUU----- ---------- ---------- 1501 ---------- ---------- -AAACCCCUU UUUUUACGAU UAUAAUGACU GUAGUUAGUA 1561 UAUAUCUAUU UAUCAAGAUG AGGGUUGGUA AAUUACAUUU UGUUUGUUAG ACUAAAAUAC 1621 UCGAGCAAAA AUGCCUUAUG CUGCUUUGCU UAAAAAUAUC ---------- ---------- 1681 ----AAACCC C--GGCUAA- C---UUCGUG -CCAGCAGCC GC-GGUAA-A ACGG-GG--- 1741 -GGG-GUU-- AGUGUUAUUC -GUGAUGA-C UGGGC-GUAA AG-GGUACGU A-GGCA---- 1801 ---------- ---------- ------GAU- -----AAU-- UGAA---AAU ACAGUA--A- 1861 AAAA------ -------CUG AGG------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- -------UAA 1981 AC-------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ------CCUC UU-------- --CA----UU 2101 CUG-UAUU-C ACUC-----A UU------AU CUUG--AGU- UCA-GAAGG- C-GGUUUAU- 2161 -----UGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUCU--CGAA --GGA-AGG- -GUGAAA--- 2281 UCU-GUUGAU --AUCU-G-G A-A-GA-CA- UUCG------ ---------- ---------- 2341 ---------- ------AUAG C-GAAA--GC A-ACAUCCG- -AUUCUG-A- --------UC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----AA-CG- CU---CAG-- -GUA---C-- UAAAGUAUGG 2641 G-GAUCAAA- UAGGAUUAGA GAC--CC-UA -GUAGUC-CA UACCUUAAAC AAU--GAG-- 2701 ---UG-UU-- -CAACGUCUU U-AA----UA UA-------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- --------GU CAA------- ---------- ---------- 2941 ---------- ---------- ---------- --UAUA--U- --UUAGGGGG UUU-AAAGC- 3001 ------UAAC ---------- -GCGUG-AAA CACUCCG-CC UGG-GGAAU- --GU---GGC 3061 C--GCAA-GG UC-UAA-ACU CAAAGGAA-U UGA------C GGUG-ACUUA ---UA-CA-- 3121 -AGGGGUG-G AGCAUGUGGU UUAAU-UCG- ACA-UACCG- --CGCA---- ------AAAC 3181 CUUA--CCAA UUUU------ ---------- -------UGU AUCUGGUU-- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------U CUUUUCGUUA GCCAUUUAUU UGGUUAGCCU 3481 UCUUCUUUCU GUUGAAGGUC UACUACGAUA UCGAUUGAAG AUGUGGGUGU UUCUAUGCGU 3541 AAGCAUGAUC UAGCUAUUUU CAAUUAACGG UAACCAA-UG AC-A------ ---AG-A-GC 3601 UGCA-UG-AU -U----GUCG -UAA------ GUUC--GU-G CC--GUGA-- -GGUGU---- 3661 ---------- ---------- ---UGGG--- --------UU CAUU------ -----CCA-U 3721 -------AA- -AC-GAAC-G CAAC-CCUUU ----UGAUUA -----GUUGC AU-AAUG-G- 3781 -AUGAA-AGU UUAAACUGGA UAUCC-AUGU UC-------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- -----ACU-A -GUUCAAC-- 4321 ---------- ---------- -----CAGCC CUUCUA---- -CCUU----U AGGG--AUUA 4381 AGG--ACAGG -----UCCA- ----C-GU-- C-A----AAU CAUUAU-GGC CUU------- 4441 ---------A AUAG-AUUGG -GCUAC---- ---------- ---------- -----ACAUG 4501 UGCUA-CAUU --GAUGAUC- GACAAC-AAG -----AA--- --GC----AA UGGC------ 4561 ---------- -GUGA----- ---------- ---GCC-UGA -----GC--- -----AAAU- 4621 ----C-UU-- UAAAA--GA- CAUU------ -------UCA GUC-CGAAU- -UGU--UC-- 4681 ---------- ---------- -UU-UG--AA ACUC--AA-- ---------- ---------- 4741 ------G-A- -GCA-U-G-- AAG-CCGGA- AUC-UCU-UG UA-AU-CGUG G-AUCAU--- 4801 ---UACG--C C-ACGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UAGUACA-A AA--GUCA-C GUACAGACC- 4921 GCCC-GUC-A UGCU-AUGGA A---ACU-AU -U-UGA-AGU -------AGA A--------- 4981 ----GU-U-- --AC-----A --AGG----- ---UU----U CAAU------ ---------- 5041 ---------- ---------- ---------- ---UGUUUCG AUAGACCACC -UUAUUGAAA 5101 GUUUUCAUAA GGCCUUGACA UUCU------ ---------- ---------- ---------- 5161 ---------- ---GUUGG-- C-------UU U------GU- ----ACAC-- ---------- 5221 GAC------U CUUUAUUUAG G--------G ACUGGAGUA- AAG-UCGAA- AC-AGGG--- 5281 -U-AGU--GG U--AGAAGAA UCU-G-CUGC UGGACCAUUA UUA....... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Parm.tet_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Paramecium tetraurelia (ciliate) -- mitochondrion. REFERENCE 1 AUTHORS Seilhamer,J.J., Olsen,G.J. and Cummings,D.J. TITLE Paramecium mitochondrial genes: I. Small subunit rRNA gene sequence and microevolution JOURNAL J. Biol. Chem. 259, 5167-5172 (1984) COMMENT Corresponding GenBank entry: K01751 legacy_attribute= divergent regions coincided with the gene boundaries. legacy_attribute= substitutions were somewhat clustered, and the two most legacy_attribute= transversions, and 9% insertions plus deletions. These legacy_attribute= nucleotide differences consisted of 53% transitions, 37% legacy_attribute= the two species (primaurelia and tetraurelia), and the legacy_attribute= [1] the overall rRNA gene sequence was 94% conserved between common_name= ciliate BASE COUNT 566 a 281 c 361 g 506 u 3728 others ORIGIN 1 .......... .......... .......... .......... .......... .........A 61 UUUUGCUGGU AGGCCAGCUC UUUAGUUGCA GCCANGCUGC AUACUUGGAU GUAAGAAUUC 121 UUUUUUAGGA GUGUGA-UCU UAGCUUUGAU -UUAACGCU- AAUCA-AAU- G--------- 181 ---------- ---------- ---------- ---------- CAUUA-CACA CGC-AA-GUU 241 UUAUU-UU-A CACAAGA-AC -CU----UCU -UCUUUGC-U UAAAAU-GCA AAGA-UCU-- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ----AGU-UU U-AA--AAU- -AGC--GUAU UGGUG--CGU AAAA-UAUGU -CUUUUU--- 481 -AUU--CGUA U---UG-U-A CCU-UA--G- -------AUA GG-------- C-----UAGG 541 U--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------UUU CUUCCUUUUA AGAAGUUUAA UGCCACCCAA 721 AAAAAAUUUU UUAAAAAAAU CGAUACUUAA GUAUUGAACU CUUUUUUUGA UC-------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- --------CA -AUAGG---- -AA---AAAA G-AUA-UA-- GAGC-----G 901 CUUCG----- ---------- ---------- AA-UUCG--A AGGG------ ---------- 961 --GGG----- ---------- -----CCACU -U-GGGCCUC CUGC-GCUUA --GCUG---A 1021 UUU-GUGA-G AAGAAUCAGC -CAC-AUACA GGUAUGUGAA A-G-ACCUUA UC-----UCG 1081 -----G---- -----ACA-G AAGUG-GGGA AUU-UUGGGC AA-UGCGC-- ------UUAA 1141 ---------- ---GCGUG-- --ACCCA-G- C-AA-AUU-G AU-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------GU-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- -----UGCGG AAGAAAAUAA GUGAGGGUGC CUUGCAGCAA 1441 UGUGGGAUAU GCCUCUUUG- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ------ACUU UUUUU---AA ACGCAGGCCA GAAACGAGUA 1561 UAAUUAAGCU AAGUUUUGUU AGAA------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ------GCUA U--GGCCAA- UA--CAUGUG -CCAGCAGCC GC-GGUAA-U ACAU-GA--- 1741 -GUA-GCU-- AGCGUUAAUC -GUCCUUA-U UGAGC-GUAC AG-AGUGAGU C-GGCG---- 1801 ---------- ---------- ------GUCA UAACAAUUA- -AU----A-- ---------- 1861 ACUA------ -------UUU UU-------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- --------AU 1981 AU-------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- -------AAA AA-------- --GA------ 2101 -------U-- --AU----UA AUAAAAAGGA CUAGUGAUU- UUU-UUUUA- U-GUAAGU-- 2161 -----UGAG- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- CUUG--UAAA --CUA-GUG- -AUAAAA--- 2281 UAC-AGGGAG --UUUA-C-A G-G-AA-CA- UUC------- ---------- ---------- 2341 ---------- ------GACG C-GAAA--GC G-ACUAACA- -AUUAAA-A- --------AA 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CG- CU---AUA-- -UCA---C-- GAAAGUAUAG 2641 G-UAAUGAA- AAGGCAUUUU AAA--CC-UA -GUAGUC-UA UACUGUAAAA GAU--GAG-- 2701 ---UA-UUU- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ------AAUA CUAA------ ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- -------GU- 3001 ------UAAC ---------- -AC-AA-AAA UACUCCG-CU UGG-GUAGU- --AA---AGC 3061 C--GCAA-GU CA-GAA-ACU UAACAGAA-U UGG------C GGGG-ACUUG ---UU-CA-- 3121 -AACGGUG-G AGCAUGUGGU UUAAU-GCG- AUA-AUCCA- --CGUA---- ------AAAC 3181 CUUA--CCAG CGUUAAA--- ---------- -------UUU UU-UUC---- -U-------- 3241 ----UUAGUU A--A------ --------GC UUC------- --------A- UGGCUAA-A- 3301 -------AUU ---------- -----UUUA- ---------- -----GAA-- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- --AAAAA-G- AG-A------ ---UGGU-AU 3601 UGCA-UG-GC -U----GUCG -UCA------ GUUC--GU-G UU--UUGA-- -AAUUU---- 3661 ---------- ---------- ---AGAA--- --------UU AAGU------ -----UUUAU 3721 -------AA- -AC-GAAC-G CAAC-CCUUG ---------- -----UUUUG UA----U--- 3781 ---------- ---GUUUA-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- -----A---- -UACAAAA-- 4321 ---------- ---------- -----UAAAU -GAUUA---- AGGAAU---U AUUCAUUUUA 4381 GCUA-GAAGG -----CUGA- ----A-GU-- CAA----AGU CCUUAC-GGU CUG------- 4441 ---------C GUAC-GCUGG -GCUAC---- ---------- ---------- -----ACACG 4501 UGUUA-CAAU --GGUAA--A AACAAU-AGA ----AAA--- --AC-----A -AAG------ 4561 ---------- CUCAAC---- ---------- ---CUU--UA -----GU--- ------U--- 4621 ----U-UU-- AAAAAA---U UACC------ -------ACA GUA-CGAAU- -UGU--UU-- 4681 ---------- ---------- -UC-UG--AA ACUU--GG-- ---------- ---------- 4741 ------A-A- -GCA-U-G-- AAG-AAGAA- AUC-GUU-AG UA-AU-CGCA A-AUAAG--- 4801 ---UAUG--N U-GCGGU-GA AA-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UAUAAGU-C AA--GUCC-U GCACACACU- 4921 GCCC-AUC-A CGCU-CAAAG A---GUU-UU -A-AAU---- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ----CUAGAA 5041 GCUGAAUUUA GGAUGUGACC CUACCCAUUU UUUUUUUUAA AAAAACUCGC -CGGUGCACC 5101 AA-ACACCGG UGUUCUAAAC AAGCU-ACUU GUUGUCAGCA CAAAGAAGAG UAAAGGCGAA 5161 ACC------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- --AUUUGAAA U--------G AUCGGAGUG- AAG-UUGAC- AC-AAGG--- 5281 -U-ACC--GG U--AUGGGAA CUU-G-CCGG UGGAGCAAGG UGAACAGACC AAUGCAUGCA 5341 CCCAGAACGG GGCGCGGUUA .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Tetr.pyr_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Tetrahymena pyriformis str. ST (ciliate) -- mitochondrion. REFERENCE 1 AUTHORS Schnare,M.N., Heinonen,T.Y.K., Young,P.G. and Gray,M.W. TITLE A discontinuous small subunit ribosomal RNA in Tetrahymena pyriformis mitochondria JOURNAL J. Biol. Chem. 261, 5187-5193 (1986) COMMENT Corresponding GenBank entry: M12714|g343462 (bases 783 to 990) Corresponding GenBank entry: M12714|g343462 (bases 1045 to 2451) common_name= ciliate isolate_name= ST NB: offset of 'GCA' at 1053r is intentional! BASE COUNT 579 a 206 c 300 g 530 u 3827 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .....AAAAA AAAUUAGGUU GUAAUCAAAA 121 AAUUUAUUGA GUGUGA-UCA UGGCUCGGGA -UUAACGCU- AAUUA-GAC- G--------- 181 ---------- ---------- ---------- ---------- CCUAA-CACA UGC-GA-GUU 241 UUAUAUAU-- -A--UUA-G- -AU------- --------AA CAAUUAA--- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ----AUC-UA A-AUG-UAU- -AGC--GUCA AGGUG--AGU AUA--AUACA UAAA-UA--- 481 -UGC--CUUU A---AG-C-C UAU-U----- -------UAA AU-------- ------AAUA 541 G--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------UUA AUUUUAAAAC AAUAACAAAU GCUAUAAUUA 721 UUAGCA---- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ------G-CU -UAAAG---- -AU---UAAU U-UGU-AU-- -AAU-AUU-- 901 --A------- ---------- ---------- ---GGUAA-U UAUUUCUAAA AUUGUUUAAU 961 AAAUAAAUAU AUUUAUUUUU AGUAAAA-UA -A-GCC-UAG A---UGUUUA --GUUG---A 1021 AUU-UAGA-G AUUGUUCAAC -CAC-AUACG GGUAUGAAAA C-U-ACCCUA UC----UAUU 1081 U----G---- -----ACA-G CAGUG-AGGA AUU-UUGGAC AA-UAUGC-- ------GAAA 1141 ---------- ---GCAUG-- --AUCCA-G- C-GA-ACU-A AU-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------GG-A 1261 AA-C---GAA GAA-GAUA-- -------GAC AA-------- --UAUU--GU AAA--G-UUU 1321 AGUGCG-AGA AUUAAC---- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ----AAAUGA 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ------GUAU --AUUCU-AG 1681 -GAGAAGCUC U--GGCUAA- UA--CAUGUG -CCAGCAGCC GC-GGUAA-U ACAU-GA--- 1741 -GGA-GCG-- AGCGUUAUCC -AUAUUGA-C UGAGU-GUAU UA-AAUACGU A-GGAU---- 1801 ---------- ---------- ------GUU- -----AUAA- ---------- ---------- 1861 UU-------- -------ACU AC-------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ------UUUA AAAAUGUAAU 1981 AAAAACUAAA UACU------ ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- -------GUA GU-------- -UAU-U---- 2101 ---------- --------UU AU---A--AA CAAU--AAU- UAU-AAU-UA A-GAGUAG-- 2161 -----GAGA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- CUUA--UAGA --ACA-ACG- -AUUAAA--- 2281 UGU-AGUUAC --ACUA-U-A U-A-GC-UA- GCCA------ ---------- ---------- 2341 ---------- ------UAAA C-UAAG--GU G-CUUCUCU- -AAUUAU-A- --------AU 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----UU-AU- CU---GAU-- -GUA---U-- GAAAGUACGG 2641 G-UAUCGAU- GAGGACUAGU CUC--CC-UA -GUAGUC-CG UACUGUAAAA GAU--GAA-- 2701 ---UA-CU-- -UUA--UGAA U-U------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------A CG-------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---AAUUCAG -GA-AUAGC- 3001 ------UAAC ---------- -GC--A-AAG UAUUCUG-CU UGG-GGAGU- --AU---UAU 3061 C--GCAA-GA UU-AAA-ACU UAACUGAA-U UGG------C GGGA-AUUUG ---UU-CG-- 3121 -AACGGUG-G AACAUGUGGU UUAAU-GCG- AUA-AUCCA- --CGCA---- ------AAAU 3181 CUUA--CCAA CGUUUUAG-- ---------- --------GC UU-UA----- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ------UCUA 3361 GUAAUAUGGU ----UAAC-- ACUAUAAUUA UGUAG----- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ----UAA-A- GUA------- ---CGGA-AU 3601 U-GCAUG-GC -U----GUCG -UCA------ GUUC--GU-G CU--GUGA-- -AGUUU---- 3661 ---------- ---------- ---AGGA--- --------UU AAGU------ -----UCU-U 3721 ------UUUA -AC-GAAU-G CAAC-CCUA- ---------- ---------- ---------- 3781 ---------- ---------- ---------- --UAAAUAAG UCUUUAAUAA GUAUUAAAUG 3841 UUUAUAUUUA UUAUUCUUGU UUAAUCUAUA UCCGGGUAUA UCGAAGUAAU AUUU----UG 3901 UAUACCUGAA UAUAGGGGUU U--------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ------UAGG -----CUGA- ----A-GU-- C-A----AGU CCCUA-UGGU CUU------- 4441 ---------U AUAC-GUUGG -GCUAC---- ---------- ---------- -----ACACG 4501 UGUUA-CAAG --GGUAAAA- -ACAAA-GAG -----AC--- --GC----AA UAGA------ 4561 ---------- -GUAA----- ---------- ---UCU-GGA -----GC--- -----AAAA- 4621 ----C-UC-- -UAAA--AAU UACC------ -------UCA GUU-CAGAU- -UGU--CU-- 4681 ---------- ---------- -CA-UG--AA AUUC--UG-- ---------- ---------- 4741 ------A-G- -GCA-U-G-- AAG-AUGAA- AUC-GUU-AG UA-AU-UGUA A-AUUAA--- 4801 ---AAUG--U U-ACAGU-GA AA-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UAUUAGU-C AA--AUUU-U GCACACACC- 4921 GCCC-AUC-A CGCU-CGGAA A---GUC-AA -U-AUU-AG- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- -CGGAAGAUU UGAAAAUCUC UACGGAAUAA UAAAUUUAAU -AUUAAUUUA 5101 UUAGUCAUUA UGUUUUUUUU UAACGCUGUG GAUGGAAAGU AGUAUCUAAU ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- CUAAUAUUGG U--------A AUCUGAGUG- AAG-UUGAC- AC-AAGG--- 5281 -U-ACU--GG U--AGGGGAA CCU-G-UUGG UGGAAUAUAU UAUUAU.... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Plas.fal_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Plasmodium falciparum str. C10 (malarial parasitic protozoan) -- mitochondrion. REFERENCE 1 AUTHORS Gardner,M.J., Bates,P.A., Ling,I.T., Moore,D.J., McCready,S., Gunasekera,M.B., Wilson,R.J. and Williamson,D.H. TITLE Mitochondrial DNA of the human malarial parasite Plasmodium falciparum JOURNAL Mol. Biochem. Parasitol. 31, 11-18 (1988) COMMENT Corresponding GenBank entry: M23443|g343059 common_name= malarial parasitic protozoan isolate_name= C10 BASE COUNT 376 a 91 c 132 g 336 u 4507 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... ........AA 1141 ---------- ---GCUUG-- --AUAAA-G- U-AA-UAU-U UC-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------UU-U 1261 UA-G---GAA GAC-AGUAUU --------AU UAA------- AAUAUU--GU AAA--C-UUU 1321 -UUAUU-UUA UU-------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- -----UUUA- ---------- ---AAUAUUG 1501 A--------- -------UAA A--------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- --AAUAA--A 1681 -AAAUAGUAU U--UGCUAU- U--UUCUGUG -CCAGCAGCA GC-GGUAA-U ACAG-AA--- 1741 -A-U-GCA-- AGCGUUAUUC --AUUUUA-U UAGGC-GUAA AG-CGUUUUA A-GGUU---- 1801 ---------- ---------- ------UUA- -----UAUU- AAU----UUU AU-------- 1861 ---------- -------GUU UAAAU----- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ----AUUUAA 1981 AUUAA----- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ----AUUUAA AA-------U AAAUUA---- 2101 --A-UAAA-U A-AU----AA UA------UA AUAG--AGU- AUU-AUAAA- A-GUAUUA-- 2161 -----AGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUUU--UUGA --GAA-GUA- -GUGAAA--- 2281 UAC-AAUGAU --ACAA-A-A A-A-GA-AU- AUCA------ ---------- ---------- 2341 ---------- ------AAGG C-GGAA--GC A-UAAUACU- -AUAUAA-UU --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CA- CU---UAA-- -AAA---C-- GAAAGCUAAG 2641 G-UAGCAAA- UAGGAUUAGA UAC--CC-UA -GUAGUC-UU AGCUGUAAAC UAU--GAA-- 2701 ---UA-UU-- -UUA--UAUU U-AU----A- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------U UU-------- ---------- ---------- 2941 ---------- ---------- ---------- -----U---- --AUAAAUA- -UA-AUAAC- 3001 ------UAAC ---------- -GUGAU-AAA UAUUCCG-CC UGA-GUAGU- --AU---AUU 3061 C--GCAA-GA AU-GAA-AUU CAAAGGAA-U UGA------C GGGA-GCUUA ---UA-CA-- 3121 -AGUGGUG-G AACAUGUGGC UUAAU-UCG- AUG-CAACA- --CGAU---- ------AAAC 3181 CUUA--CCAA AAUUUAACA- ---------- -------AUA UU-UUU---- AA-------- 3241 ----UAUUAA ---------- --------GA AA-------- ---------- -UUAAUA--- 3301 ---------- ---------- ----UUUUAA U--------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---AAAAUA- UA-U------ ---AGGU-AG 3601 UGCA-UG-GC -U----GUCG -UCA------ GUUC--GU-G CU--GUGA-- -AGUGU---- 3661 ---------- ---------- ---UAAU--- --------UU UAGU------ -----AUU-A 3721 -------UA- -AC-GAAC-G UAAC-CUUUU ---------- -----AUAAA AA-------- 3781 ---------- -----AAA-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- -UUUUUAU-- 4321 ---------- ---------- ---------- ---------- AAUAA----- ------AUAA 4381 UAA--UAAAG -----AUUA- ----C-GU-- C-A----AGU CAUUAU-GCU CCU------- 4441 ---------U AUAU-UUUGG -GCUGC---- ---------- ---------- -----UCACG 4501 UGUUA-CAUA --AAAUAU-- UACAAU-AUU ---------- --UU------ -AUUAUAU-- 4561 ---------- -GUUA----- --------AA UAUAAU---- -----AA--- -----UUAA- 4621 ----A-AU-- --------AU AUUU------ -------AUA GUU-CAGAU- -UAU--AA-- 4681 ---------- ---------- -AU-UG--AA ACUC--AU-- ---------- ---------- 4741 ------U-U- -AUA-U-A-- AAG-AUGGA- AUC-ACU-AG UA-AU-CGCU A-AUCAG--- 4801 ---AAUUA-U A-GCGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AAGUUCU-U AA--GCUU.. .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Chdr.cri_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Chondrus crispus (red alga (=carragheen)) -- mitochondrion. REFERENCE 1 AUTHORS Leblanc,C., Kloareg,B., Loiseaux-deGoer,S. and Boyen,C. TITLE DNA sequence, structure, and phylogenetic relationship of the mitochondrial small-subunit rRNA from the red alga Chondrus Crispus (Gigartinales, Rhodophytes) JOURNAL J. Mol. Evol. 41, 196-202 (1995) COMMENT Corresponding GenBank entry: Z30950|g602494 (bases 34 to 1409) common_name= red alga (=carragheen) BASE COUNT 500 a 184 c 269 g 423 u 4066 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......AUA 121 UAAUAAAAGA GUUUGA-UCC UGGCUCAGAA -UGAACGCU- AGUGG-UUA- G--------- 181 ---------- ---------- ---------- ---------- CUUAA-CACA UGC-AA-GCU 241 AAAAU-UU-- ----UUU-A- -U-------- ---------- -UAGUU---- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 -----AU-AA A-AUU-AGU- -AGC--GAAC GGGUG--AGU AAU--GCAUA -AAAAUU--- 481 -AAC--CUUA A---AA-A-- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --AU----UG 781 U--------- ---UAAAU-- ---------- -ACAUUUAA- ---AAU---- ---------- 841 UAA------- ---AUUG-UU -UUAAG---- -AA---AAGU U-UAU-GU-- -AAG-AUU-- 901 --A------- ---------- ---------- ---AGUUG-U UGGUAAU--- ---------- 961 UUAAUAG--- ---------- AG--UAC-CA -A-GCU-UAC GA--UCUUUA --GUUG---G 1021 UCU-AUGA-G GAUGAACAGC -CAC-AUU-G GAACUGAGAU ACG-GUCCAA ACUUA-AUUA 1081 --AAAG---- -----GCA-G CAGUG-AGGA AUA-UUGGGC AA-UGGGU-- ------GAAA 1141 ---------- ---GCUUG-- --ACCCA-G- C-UA-AAC-C AC-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AA-G 1261 UG-U---GAU GAA-AGUA-- ---------A AA-------- --UACU--UU AAA--A-CAC 1321 -UUUUU-UAA AA---U---- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---AAAUAAU 1501 G--------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ------A--- --UUUUAAUA 1681 -AAAUAGUCC U--GGCUAA- U---UUCGUG -CCAGCAGCC GC-GGUAA-A ACGG-GA--- 1741 -AGG-GCA-- AGCGUUAUUC -GGAUUAA-U UGGGC-GUAA AG-AAUACGU A-AGUU---- 1801 ---------- ---------- ------GAA- -----AAUC- CAA----UUU UAAG------ 1861 ---------- -------AUA AAUU------ ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- --------UU 1981 AA-------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- -----AGUUU AU-----UUU UAAUUAA--- 2101 UUU-AAAA-A A-UU----AA UU------UU CUAG--AGU- UUAAAGAGA- A-GAUUAU-- 2161 -----AGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUUU--AAGU --GUA-ACG- -GUAAAA--- 2281 UGU-UUUGAU --ACUU-A-A A-A-GA-AU- UUCA------ ---------- ---------- 2341 ---------- ------ACAG C-GAAA--GC A-GUAAUCU- -AAAAUA-AA --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CA- CU---GAG-- -GUA---U-- UAAAGUGUGG 2641 G-UAGCGAA- AGGGAUUAGA UA---CC-CU -GUAGUC-CA CACCCUGACG AU---AAG-- 2701 ---UG-UU-- -CAU--UUUG G-A------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------G AU-------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---UCAGAA- -AU-GUAGC- 3001 ------UAAC ---------- -GUGUU-AAA CACUUCG-CC UGG-GAACU- --AC---GAU 3061 U--GCAA-AA UU-AAA-ACU CAAAGGAA-U UGA------C GGGG-ACUUA ---CA-CA-- 3121 -AGCAGUG-G AGCAUGUGGU UUAAA-UCG- ACA-AUCCG- --CGCA---- ------AAAU 3181 CUUA--CCAA UUUUU----- ---------- -------GUA -U-AAU---- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ----UAUA-- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---AUUAAU- UA-C------ ---AGGU-GU 3601 UGCA-UG-GC -U----GUCG -UCA------ GUCC--GU-G CU--GUGA-- -AGCGU---- 3661 ---------- ---------- ---UUGG--- --------UU CAUU------ -----CCA-A 3721 -------UAA -AC-GGAC-G AAAC-UCUUA ---------- -----UAUAU U--------- 3781 ---------- ----UUUG-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- --AAUAUA-- 4321 ---------- ---------- -----AACUG -CUAAA---- GAUAU----C UUGG--AGGA 4381 AGG--UAAGA -----AUGA- ----C-GU-- C-A----AGU CCUCAU-GAC CCU------- 4441 ---------A AUAA-AUUGG -GCUAC---- ---------- ---------- ---UUUCAUG 4501 UGCUA-CAAU --AAUUUU-- UUCAAA-AAG -----UA--- --GC----AA A-AAC----- 4561 ---------- -GUGA----- ---------- ---GUU-UUA -----GC--- -----AAAC- 4621 ----C-UU-- UUAAAC--AA AAUU------ --------AU AUU-CGGAU- -UAU--UU-- 4681 ---------- ---------- -UC-UG--AA AUUC--GA-- ---------- ---------- 4741 ------A-A- -AUA-U-G-- AAG-UUGGA- AUU-GCU-AG UA-AU-CGUA A-AUUAG--- 4801 ---AAUG--U U-ACGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UUGUUCU-U AA--GUCU-U GUACACACC- 4921 GCCC-GUC-A CGCU-AUGGA A---AUU-CU -U-UUU-GCU -------UGA ---------- 4981 ----AAAA-- --UGU----- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- --------UU 5101 A--------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ------ACA- ---AUUUU-- ---------- 5221 -AU------A GU-AAAAGAA A--------A ACUGGAGUG- AAG-UCGUA- AC-AAGG--- 5281 -U-AGC--CG U--AGGGGAA CCU-G-CGGC UGGAAAAUAA UUAAAUAUUU .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Emrc.nid_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Emericella nidulans (ascocarp fungus) -- mitochondrion. REFERENCE 1 AUTHORS Koechel,H.G. and Kuentzel,H. TITLE nucleotide sequence of the aspergillus nidulans mitochondrial gene coding for the small ribosomal subunit rna: homology to e.coli 16s rrna JOURNAL Nucleic Acids Res. 9, 5689-5696 (1981) COMMENT Corresponding GenBank entry: V00653 (bases 1 to 1437) legacy_attribute= basionym:Sterigmatocystis nidulans anamorph= Aspergillus nidulans common_name= ascocarp fungus BASE COUNT 500 a 208 c 300 g 429 u 4005 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 AAAAUUUUGA GUUUGA-UGA UGGCUCUGAU -UGAACGCU- GUCCA-AGU- A--------- 181 ---------- ---------- ---------- ---------- CUUGA-CACA UGC-UA-AUC 241 GAACG-AC-- ----UA--A- -UUAGUU--- ---------- -AUUA----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 AACUAAG--U A-GU--AGU- -GGU--GUAC AGGUG--AGU AAAA-GAUAA -UUUGGC--- 481 -UAC--CUUA A---AG-U-A A----G--GG GA-----AAA A------UCC C--------U 541 U--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --AUAAAA-- 781 ---------- ---------- ---------- ----AGAAA- ---GGA---- ------AAAA 841 GAAGG----- ---UCCG-CU -UUAAG---- -AU---GUUA A-UUA-UU-A UCAC-GGU-- 901 --G------- ---------- ---------- ---AGUAG-U AGUAAAG--- ---------- 961 GUAAUGA--- ---------- CU--UUA-CU -A-GCU--AA A---UCCGUA --GUCGU--G 1021 ACU-GAGA-G GUCGAUCGAC -CAC-AUU-G GGUCUGAAAA AA--CCCCAA UGC--GUUUU 1081 A---GU---- -----ACA-G CAGUG-AGGA AUA-UUGGUC AA-UGGCC-- ------GAAA 1141 ---------- ---GGC-G-- --AACCA-G- U-AA-CUU-G GA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AG-A 1261 AU-G---AAA GUG-UAUU-- -------AUA AU-------- --AAUA-CAA UAA--CGAUU 1321 -AUAUC-GUA UA-------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- --------AA AUU---CUAA AUAGAAUAAU 1501 GAUAAUGAC- ---AAUUU-- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- --UCUAU-UU 1681 --AUAAGUCU U--GACCAAA C---UACGUG -CCAGCAGUC GC-GGUAA-U ACGU-AG--- 1741 -AAG-ACU-- AGUGUUAAUC -AUCUUUA-U UAGGU-UUAA AG-GGUACCU A-GACG---- 1801 ---------- ---------- ------GUA- -----AAU-- UAA------- ---------- 1861 ---------- -------ACU C--------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- -------UAA 1981 AU-------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- --------GA GU-------- ---------- 2101 ---------A C-UU-----A UU------UA CUAG--AGU- UUUAUGU-A- A-GAAGGA-- 2161 -----AGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- GCUC--UGGA --GUA-GUG- -AUAUAA--- 2281 UAC-GUAUAU --ACCA-G-A G-A-GA-CU- GGUA------ ---------- ---------- 2341 ---------- ------ACGG C-GAAG--GC A-UCCUUCU- AUGUAAA-A- --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CG- UU---GAG-- -GGA---C-- GAAGGCUUGG 2641 G-UAGCAAG- AAGGAUUAGA UAC--CC-UA -GUAGUC-CA AGCAGACAAU GAU--GAA-- 2701 ---UG-UC-- -AUA--GACU A-GA-AAAAG UC-------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- --------GU UUA------- ---------- ---------- 2941 ---------- ---------- ---------- --GACUAUAA A-UUUAGUC- -UA-UAAAU- 3001 ------GAAA ---------- -GUG-U-AAG CAUUCCA-CC UCA-AGAGU- --AA---UAU 3061 G--GCAA-CA UA-UAA-ACU GAAAUCAU-U AGA------C CGUU-UCUGA ---GA-CC-- 3121 -AGUAGUG-A AGUAUGUUAU UUAAU-UCG- AUG-AUCCG- --CGAA---- ------AAAC 3181 CUUA--CCAC AGUUUGAAUA UUUUAC---- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AAGC-GC 3601 UGCA-CG-GC -U----GUUU -UUA------ GUUA--AU-G UC--GUGA-- -GAUCU---- 3661 ---------- ---------- ----GG---- --------UU AAGU------ ------CC-- 3721 ------UUUA -AU-UAAC-G AAAA-CCCU- ------C--- -----ACUUU AU-------- 3781 ---------- --UUGCAUUU ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- -AUAAAGU-- 4321 ---------- ---------- -----UGAUC -GCC-----U UUAUAUU--- -GGU-UAGAU 4381 AAU---AGGG -----AUUA- ----A-GA-- C-A----AGU CAUCAU-GGC CUU------- 4441 ---------A AUAC-UGUGG -GCUAU---- ---------- ---------- -----AGACG 4501 UGCCA-CAUA --UGCCUUU- -ACAAA-GGG -----AU--- --GC----GA UUUU------ 4561 ---------- --GUG----- ---------- ---AAA-UUG A----GC--- -----UAAU- 4621 ----C-CC-- CCAAA--AAA GGAU------ -------AUA AUA-UGGAU- -UGU--AG-- 4681 ---------- ---------- -UC-UG--UA ACUC--GA-- ---------- ---------- 4741 ------C-U- -ACA-U-G-- AAU-AAGGA- AUU-ACU-AG UA-AU-CGUG A-AUCACC-- 4801 ---AUCG--U C-ACGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- --UAAAAA-U CA--GCUG-G GUACUAACC- 4921 ACUC-GUC-A GGCG-CUGAA A---GAA-GU AU-GUG-CA- -------AGA A--------- 4981 ----GUUU-- --GA------ --UUUA---- CUUAUAUU-U AUAAUAUAUA UAA------- 5041 ---------- ---------- ---------- ---------- ---------- -------UCA 5101 G--------- ---------- ---------- ---------- ---------- ---------- 5161 -----UUAUA UAUAUUUA-- -------UAA G------UU- ----AAAU-- --------UU 5221 UCGCA----- UGCAUGACUU U--------G AUUGGUGUU- AAG-UCGAA- AU-AUGG--- 5281 -U-UCG--UG U--AAUGGAA AUU-G-CACG GGAUGAAUUA .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Neur.cr2_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Neurospora crassa str. 74-OR23-1A FGSC 2489 (red bread mold; ascomycete fungus) -- mitochondrion. REFERENCE 1 AUTHORS Chiang,C.C., Kennell,J.C., Wanner,L.A. and Lambowitz,A.M. TITLE A mitochondrial retroplasmid integrates into mitochondrial DNA by a novel mechanism involving the synthesis of a hybrid cDNA and homologous recombination JOURNAL Mol. Cell. Biol. 14 (10), 6419-6432 (1994) COMMENT Corresponding GenBank entry: L33367|g495655 (bases 1 to 1971) common_name= red bread mold; ascomycete fungus isolate_name= 74-OR23-1A NB: identical to Neur.cr4_M except for 3' end BASE COUNT 645 a 307 c 423 g 596 u 3471 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .....GAUGU AAUAAAAAAA AUUUUUUUUA AUUUUAUAUU ACAUCAAUAA 121 AAAUAGAUGA GUUUGG-UGA UGGCUCUGAU -UGAACACU- GUUCA-AAU- A--------- 181 ---------- ---------- ---------- ---------- CUUGA-CACA UGC-UA-AUC 241 GAACG-UU-- ----UA--A- -UU------- ---------- ---------- --------UU 301 UGGCCUAAGA AAGGGGUUUC AUCGUGGCUU AAGCUAAGGG GUUUAUUGUG GCUUAAGCUA 361 AGGUUUAAUC UUUGACUUAA GCGGGUGUUU UAGGGGAACU UGUGCCCCUA AAACCUCUU- 421 ----AAU--U A-AA--AGU- -GGU--GUAC AGGUG--AGU AU---AAUAU -UUUUUC--G 481 CUUAA-CUUA A---AG-U-G AAG-G----- -------CAA AU-------- ------CCUU 541 C--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --AUAUUGCA 781 AAAGG----A UAUCUUAGGC A------CCU GUUG--AAA- ---GGG---- G-CCUA-CUU 841 AUAU-UA--- -UAUCCG-CU -UUAAG--AG GAUGA-GAAA A-GUU-UC-- -AGA-GAU-- 901 --A------- ---------- ---------- ---GGUAG-U UGUUAAG--- ---------- 961 GUCAUGG--- ---------- CU--UAA-CA -A-GCC-AAU AA--UUCUCU UAGUCGA--A 1021 GCU-GAAAAG GCUGAUCGAC -CAC-AUU-G GGAAUGAAAA AA--UCCCAA GGC--AAAUA 1081 G---GU---- -----ACA-G CAGUG-AGGA AUC-UUGGUC AA-UGGGC-- ------CCAC 1141 ---------- ---GCCUG-- --AACUG-G- U-AA-CUU-G GA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------GG-A 1261 AU-GA--GGG GUC-AACU-- U------UGC AAAU------ --GGAU-GAG UGA-UC-GUU 1321 -AGAAG-AUC CUUAGU---- CCCCUGGUCU UCUUGACACA UGAGGUAUAU ACUUCUAGUC 1381 CAUAUUGGGG GGAGACUCCA CGUCGAUUUA UCGAGUAAAA UUCUGUAUAC AUAUUGGAUA 1441 AUG------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ------ACAA --UAUGU-AC 1681 --AUUUGUCU U--GACUAA- U---UACGUG -CCAGCAGUC GC-GGCAA-U ACGU-AA--- 1741 -GAG-ACU-- AGUGUUAAUC -AUCAUAA-A UAGGU-UUAA AG-GGUACUC A-GACG---- 1801 ---------- ---------- ------GAA- -----AAAU- -------UCG CCC------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ------AAAU 1981 AUA------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 -GG-G-GA-C A-------AU UU------UU CUAG--AGU- UUUAUGU-A- A-GAAGGUC- 2161 -----GUAC- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UCUA--GAGU --GGA-GAG- -AUAAAA--- 2281 UUC-UGUGAU A-CCUA-G-G G-G-AC-GG- GUAA------ ---------- ---------- 2341 ---------- ------A-GG C-GAAG--GC A-AUCUUUU- AUGUAAA-A- --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CG- UC---GAA-- -GGA---C-- GAAGGCAAAG 2641 G-GAACAAA- AAGGAUUAGA UAC--CC-CA -GUAGUC-UU UGCAGACAAU UAU--GAA-- 2701 ---UG-CC-- -AUA--GGUU A-GA----U- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- --------UU UUA------- ---------- ---------- 2941 ---------- ---------- ---------- -----A---- --UUUAGUC- -UA-UAAAU- 3001 ------GAAA ---------- -GUG-U-AAG CAUUUCA-CC UCA-AGAGU- --AA---GGC 3061 G--GCAA-CG CA-GGA-ACU GAAAUCAC-U AGA------C CGUU-UCUGA ---CA-CC-- 3121 -AGCAAUG-A AGUAUGUUAU UUAAU-UCG- GUG-ACCCA- --CGAA---- ------AAAC 3181 CUUA--CCAC AAU-UGAA-- ---------- -------UAU UA-AUAA--- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- --UAAUGAUA UUAUUUUUUA UGCUUGAUAU GGCAAGCACU CAAUUUUCCC 3481 CUCCCCGUAG GUUUGCCGCG GGGGGGGAGA AAAAAGAAAA AUAAUGGAUA AUAUAGUAAA 3541 UACCAUAUUC CAACUAUAUU UAA------- --UUAUU-A- AUAC------ ---AAGU-GU 3601 UGCA-CG-GC -U----GUCU -UCA------ GUUGA-UG-U UG--CGAAA- -CUGUGG--- 3661 ---------- ---------- ---UUCG--- ---------U UCCA------ -----UGG-A 3721 -----AUUAA -CG-UAA--A CCCU-UGCUU -----UA--- -----UUUGU ---------- 3781 ---------- --AAAUAUU- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---AUAAA-- 4321 ---------- ---------- ---GCAGUUC ACCU------ UUAUAU---- -AGGAAAUGA 4381 UAA--AAGGG -----AUC-- ----A-GA-- C-A----AGU CAUCAU-GGC CUA------- 4441 ---------A AUAU-UGUGG -GCUAU---- ---------- ---------- -----AGACG 4501 CGCCA-CAUU --UUCCUAA- -ACAAA-GAG AU--GCA--- --AA------ -AAU------ 4561 ---------- -GUGA----- ---------- ---AUU---- -----UU--- ----AGCUA- 4621 --AUC-UC-- AAAAA--AUA GGAU------ --AAAAAUAU ACA-AGGAU- -UGU--AG-- 4681 ---------- ---------- -UC-UG--AA AUUCG-GA-- ---------- ---------- 4741 ------C-U- -GCA-U-G-- AAU-AAGAA- AUU-GCU-AG UA-AU-CGUG A-AUCAC--- 4801 ---CAUG--A C-ACGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- --AUUCCC-U CG--GAUU-G GUACUAACC- 4921 ACUC-GUC-A CAUG-CUGAA A---GGA-GU ---GCG-UG- ------CAAU AA-------- 4981 ----GUUU-G C-UUU----U C-UAU----- ---------U AUAAGU---- ---------- 5041 ---------- ---------- ---------- ---------- ---------- --AAGUAGAC 5101 AUAUAG---- ---------- ---------- ---------- ---------- ---------- 5161 ---------- -GUUUAGA-U GUU-----AU A-----AUA- ----GGAU-- --------CC 5221 UUCGUA---- UGCGCGGCUC U--------G AUUAGUGUU- AAG-UCGAA- AU-ACGG--- 5281 -U-UCG--UG U--AGUGGAA GUU-G-CACG GGACUUAUCA AUGUUGAACA AUACGAUUGG 5341 AUAUACACCC CUUGGGUUCG UGGCGAAAAU UGCCUCGUUC CAUUUUAUAG GGAAAAUAUA 5401 UCCUUAUGUA UAUAUUCUUU AUUUUAAAGU AUAUAUAUAU AA // LOCUS Sacc.cer_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Saccharomyces cerevisiae (brewer's yeast; baker's yeast) -- mitochondrion. REFERENCE 1 AUTHORS de Zamaroczy,M. and Bernardi,G. TITLE The primary structure of the mitochondrial genome of Saccharomyces cerevisiae-a review JOURNAL Gene 47, 155-177 (1986) COMMENT Corresponding GenBank entry: M62622|g343773 (bases 25428 to 27097) common_name= brewer's yeast; baker's yeast NB: complete genome compiled from many strains and GB entries BASE COUNT 697 a 154 c 222 g 597 u 3772 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... ..AGUAAAAA 121 AUUUAUAAGA AUAUGA-UGU UGUUUCAGAU -UAAGCGCU- AAAUA-AGG- A--------- 181 ---------- ---------- ---------- ---------- CAUGA-CGCA UAC-GA-GUC 241 AUACG-UU-- ----UAU-U- -AUU------ ---------- GAUAA----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---GAUA-AU A-AAUAUGU- -GGU--GUAA ACGUG--AGU AAUU-UUAUU AGGAAUU--A 481 AUGAA-CUAU A---GA-A-U AAGCU----- -------AAA U--------- ------ACUU 541 A--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --AUAUA-UU 781 AUUAUAUAAA ---AAUAA-- --UUUAUAUA AUAA--AAA- ---GGA---U AUAUAU---- 841 AUA--AUAU- AUAUUUA-UC -UAUAG---- -UC---AAGC C-AAU-AA-- -UGG-UUU-- 901 --A------- ---------- ---------- ---GGUAG-U AGGUUUA--- ---------- 961 UUAAGAGU-- ---------- UA--AAC-CU -A-GCC-AAC GA--UCCAUA --AUCGA--U 1021 AAU-GAAA-G UUAGAACGAU -CAC-GUU-G ACUCUGAAAU AU--AGUCAA UAUCU--AUA 1081 --AGAU---- -----ACA-G CAGUG-AGGA AUA-UUGGAC AA-UGAUC-- ------GAAA 1141 ---------- ---GAUUG-- --AUCCA-G- U-UA-CUU-A UU-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AG-G 1261 AU-G----AU AUA-UAAAA- --------AU A--------- -UUUUA---U UU---U-AUU 1321 ---------- ---------- ---------- ---------- ---------- --UAGUUCCG 1381 GGGCCCGGCC ACGGAGCCGA ACCCGAAAGG AGAAAUAUUA AAUAUUUAUA AUAAUAAUAA 1441 UAAUAAUAUA UAUAUAUAAA UUGAUUAAAA AUAAA----- ---------- ---------- 1501 ---------- ---------- -AUCCAUAAA UAAUUAAAAU AAUGAUAUUA AUUACCAUAU 1561 AUAUUUU--A UAUGGAUAUA UAUAUUAAUA AUAAUAUUAA UUU-AUUAUU AUUAAUAAUA 1621 UAUUUUAA-- ---------- ---------- ---------- ---------- ---------- 1681 ----UAGUCC U--GACUAA- UA--UUUGUG -CCAGCAGUC GC-GGUAA-C ACAA-AG--- 1741 -AGG-GCG-- AGCGUUAAUC ----AU---A AUGGU-UUAA AG-GAUCCGU AGAAUG---- 1801 ---------- ---------- ------AAU- -----UAUA- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- --------UA 1981 U--------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --------UA UA------AU UUAG--AGU- UAA-UAAAA- U-UAAUUAA- 2161 -----AGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUAU--AAUA --GUA-AAG- -AUGAAA--- 2281 UAA-UAAUAA U-AAUU-A-U A-A-GA-CU- AAUA------ ---------- ---------- 2341 ---------- ------UAUG U-GAAA--AU AUUAAUUAA- --AUAUU-A- --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CA- UU---GAG-- -GGA---U-- UAAAACUAGA 2641 G-U-GCGAA- ACGGAUUCGA UAU--UC-GU -GUAGUUUCU AGUAGUAAAC UAU--GAA-- 2701 ---UA-CA-- -AUU--AUUU A-UA----AU A--------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- --------UA UAU------- ---------- ---------- 2941 ---------- ---------- ---------- ---UAU--A- --UAUAAAU- -AA-UAAAU- 3001 ------GAAA ---------- -AUG-A-AAG UAUUCCA-CC UGA-AGAGU- --AC---GUU 3061 A--GCAA-UA AU-GAA-ACU CAAAACAA-U AGA------C GGUU-ACAGA ---CU-UA-- 3121 -AGCAGUG-G AACAUGUUAU UUAAU-UCG- AUA-AUCCA- --CGAC---- ------UAAC 3181 UUUA--CCAU AUUUUGAA-- ---------- -------UAU UA-UAA---- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ------UAAU 3361 UA-------- ----UUA--- ---------U AAUUA----- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---UUAU-AU UA-C------ ---AGGC-GU 3601 UACA-UU-GU -U----GUCU -UUA------ GUUC--GU-G CU--GCAA-- -AGUUU---- 3661 ---------- ---------- ---UAGA--- --------UU AAAU------ -----GUG-C 3721 ------AUAA -AC-GAGC-A AAAC-UCC-- -AUAUAUAUA AU---UUU-- ---------- 3781 ---------- ----AUAU-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- --------UA -UUUAU---- -UAAU----A UAAA-----G 4381 AAA----GGA -----AUUA- ----A-GA-- C-A----AAU CAUAAU-GAU CCU------- 4441 ---------U AUAA-UAUGG -GUAAU---- ---------- ---------- -----AGACG 4501 UGCUA-UAAU --AAAAUGA- -UAAUA-AAA --UUAUAUAA -AAU------ ----AUAUUU 4561 AAUUAUAUUU AAUUAAUAAU AUAAAACAUU UUA------- -----AUU-- --UUUAAUAU 4621 A---U-UU-- UUUUA--UUA UAUA------ -------UUA AUA-UGAAU- -UAU--AA-- 4681 ---------- ---------- -UC-UG--AA AUUC--GA-- ---------- ---------- 4741 ------U-U- -AUA-U-G-- AAA-AAAGA- AUU-GCU-AG UA-AUACGUA A-AUUAG--- 4801 ---UAUG--U U-ACGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- --AUUCUA-A CU--GUUU-C GCACUAAUC- 4921 ACUC-AUC-A CGCG-UUGAA A---CAU-AU -U-AUUAUCU ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- -------UAU UAUUUAUAUA AUAUUUUUUA -AUAAAUAUU 5101 AAUAAUUAUU AAUUUAUAUU UAUUUAUAUC ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------A GAAAUAAUAU G--------A AUUAAUGCG- AAG-UUGAA- AU-ACAG--- 5281 -U-UAC--CG U--AGGGGAA CCU-G-CGGU GGGCUUAUAA AUAUCUUAAA UAUUCUUACA 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Szsa.jap_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Schizosaccharomyces japonicus (fission yeast) -- mitochondrion. REFERENCE 1 AUTHORS Wolf,K.W. TITLE JOURNAL Unpublished (1993) COMMENT Corresponding GenBank entry: X72804 common_name= fission yeast BASE COUNT 722 a 200 c 253 g 644 u 3623 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... ..AUAGUAAA 121 AUAUUAAAGA GUUUGA-UGU UAGCUCAGUU --UAACAUU- AGCUA-GAC- A--------- 181 ---------- ---------- ---------- ---------- AUUAA-CACA UGC-UU-AUG 241 --AAU-AUU- ----GAU-A- -AU------- ---------- -UAAA----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ----AUU-AU C-AUU-AUU- -UGU--GUGA AGGUG--AGU AAAAAAUUA- -GUAAUA--- 481 ------CCCU A--AUA-A-A AU------GA AUU--AUCUA AUUG--AAUU CUUAAG--AU 541 UUUGUAAAUA CAUGCUUUGC AAUUUAUAAU UUACAUAAAU CUAUUGAUUA AUCUUUAGAU 601 UAAUCAUUAA AUAAAAAUAA AUACCUAUUA AAUAUCUAUC AUAAUUUAUG AAUUAUCAAA 661 UAGAUUAAAU AGAUUAAAUA GAUUAAAAUA UUUUAUAGAA UUGAUCAUGU GUAACAUGAU 721 UAUUAAGGUU AGAAAUUAAU CUUGAAUUUU UAAAUUUUUA AAUUUAUAAA UU------UA 781 A--------- ---AGGAU-- ---------- -UUA-CUAA- ---UUU---- ---------G 841 CAAA------ ---GAGGUUG -UUGGG-AUA AUUAAAUA-A C-AUU-AU-- CUUU-GAU-- 901 --A------- ---------- ---------- ---AUGUG-G AGAAUUU--- ---------- 961 GUAUGU---- ---------- AU--CUA-CA -A-GCC-GUU AUUAUUUGUA --AUCAA--C 1021 AAU-UUGA-A AGGAUUGUAU -CAC-AUU-G GUGUUAAAAG AAA-CCAAAA UGAAU-UUA- 1081 --AUUC---- ---AUUCA-G CAGUG-UUGA GAA-UUGGUC AA-UGUUUU- ------UAAA 1141 A--------- --AGAAUG-- --AACCA-G- U-GA-UCU-A GC-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------CU-G 1261 AC-----GAA -----ACA-- --------AA A--------- --UGU----- AAA----GUC 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ----AAAUAA AAAAAGAAAG 1501 GAUAACAAAA U--------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ------AAUC UC-AGCCAA- UA-UAUCGUG -CCAGCCGCU GC-GGUUA-A ACGA-AA--- 1741 GAGA--UA-- AAUGUUAAAC -AUCAUUA-U UAGGU-UUAA AG-GAUACGC A-GAUG---- 1801 ---------- ---------- ------GUU- -----AA--- ----AC---- -UUAUU---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- --------AU 1981 UU-------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- --------AA 2101 UAA------- -----AUA-- UU------AA CUAG--AGU- AUAAUAG--- A-AGAUUA-- 2161 ----UAGA-- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- AAAU-AAAAG ---GA-GAG- -AUGAAA--- 2281 UUC-AAUGAU --CUUU-A-U U-U-AA-CU- GCUUA----- ---------- ---------- 2341 ---------- ------AAGU G-AAAA--CA A-UAAUCUU- -ACUUUA-U- --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CA- UU---AAG-- -GUA---U-- GUAAGCUAAA 2641 UUUAACAAA- UAGGAUUAGA UAC--CC-UA -GUAGUU-UU AGCCGUAAAC GAU--AAUUG 2701 UUAGAAAUUA -GAU------ ---------- -----UCAAU CAAAAUCUAA GUUAAAUCUA 2761 UAUUAAUUAA AAAUAAGAAU AAAUCUUAUA UUAAUUAAAA CAAUACUGAU UAAUUACUAA 2821 UUUAUUAGAU UAUUAUUUAG UUUCUAUCCG AAAGGAUUAA ACUAUUUCGC AAGAUUGAAA 2881 CCCAAAACUU UAGACGGUUC UAGAAACUAG CAGUGAAUCA UGUUAUUUAA UUCGAUAAUC 2941 CACGUAAAAU CUUACCUUUA UUAAAAAAA- ---------- ---------- -AU-UAAUG- 3001 --UCAACGAA UU-------- -CAUAUGAAU UCUUAAU--G UAG-UCUGU- AUGAA--UAA 3061 A--UUUA-AU UA-AAU-UUA UUCUUCAU-- GGAAAUGCAU AAAAACUUAU --ACU-AA-- 3121 -UUUAGGC-A AUCAUGCAAU GCAUG----- AU--UUCCA- -----U---- ------GAAG 3181 AAUA--CCAA UGGUAUUCGU CU-------- ---------- -A-UUA---- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---CUAAAU- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---UAAU-U- UU-U------ ---UGGU-AU 3601 CGCG-UG-GC -U----GUCU -UUA------ GUUU--GU-G UU--GUGA-- -AAUG----- 3661 ---------- ---------- ---CUUG--- --------GU UAAU------ -----UCC-U 3721 -------AUA -AC-AAAC-G CAAA-CCUUU ---------- -----AAAUA A--------- 3781 --------UU AUCUCCAUAA UUU------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- --UUAUUG-- 4321 ---------- ---------- ---AUUAAAA -UACU----- -AUU------ AGUA--UUUU 4381 UUA-AUAAGG -----ACGA- ----A-GA-- C-A----AGU CAAUAUGUAU CGUA------ 4441 ---------A AUGU-AAAGG -GCUAU---- ---------- ---------- -----AGACG 4501 UGAUA-UAAA --AAGU---- -------UAU ---------- ---------- ---------- 4561 -------ACA AUUUUAAA-- ---------- ---------- ---------- ---------- 4621 ----A-UA-- ---------- ACUU------ -------AAU GUU-CUAAU- -AAU--UA-- 4681 ---------- ---------- -UC-UG--UU ACUC--GA-- ---------- ---------- 4741 ------U-A- -AUU-U-G-- AAG-GAGGA- AUU-GCUUAG UA-AU-CGUU A-AUCAU--- 4801 ---UAUG--U A-ACGGU-GA AA-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- --UUUUUA-U CU--AGAA-U GUACUAACU- 4921 ACUC-GUC-A AGCG-CGGAA A---GAA-UC -U-UC----- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- --------UU 5101 AUU------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---GAAUUUU U--------A AUUCGUGUU- AAG-UCUAA- AU-AAGG--- 5281 -U-AGC--UG U--AGAGGAA UCU-G-UAGC UGAAUUAUUA UUAAAGGAAA AUAACCCCCC 5341 CCACCC.... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Szsa.pom_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Schizosaccharomyces pombe (fission yeast) -- mitochondrion. REFERENCE 1 AUTHORS Trinkl,H., Lang,B.F. and Wolf,K. TITLE Nucleotide sequence of the gene encoding the small ribosomal RNA in the mitochondrial genome of the fission yeast Schizosaccharomyces pombe JOURNAL Nucleic Acids Res. 17, 6730-6730 (1989) COMMENT Corresponding GenBank entry: X15738|g13663 (bases 1 to 1422) common_name= fission yeast BASE COUNT 485 a 203 c 280 g 454 u 4020 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .AUAAAAAUA 121 UAUAUAAUGA GUUUGA-UGU UAGCUCGGUU -AUAACGCU- AUCUA-GAG- A--------- 181 ---------- ---------- ---------- ---------- UUUUAACACA UGC-AA-AUC 241 GAACG----- AA--UCAAC- -AAAAA--CA AUA-CAUCCU -UUAG----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- -----GGGAU G-UUUGUGUU 421 -UUUUUG-UG A-----CGU- -GGU--GAAC AGGUG--AGU AAA--AGGGA AGAACGG--- 481 -ACC--UUAA A---UU-U-- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------CGG CUAAAUUCCG AAUAAACACA CUC------- 721 ---------- ---------- ---------- ---------- ---------- --UUU---UG 781 ---------- -GAGUGUUG- ---------- --UG-AAAG- ---AAG---U ---------G 841 AAA------- --ACUUU-GA -UUUAA---- -GA---CUGG C-UUC-UU-- ACGA-UUA-- 901 --A------- ---------- ---------- ---AGUAG-U UGGAGAG--- ---------- 961 GUAAAAG--- ---------- CU--UAA-CA -A-GCU--CA AA---UCGUA --AUCAUGAC 1021 ACU-AAGU-G GUGCUCUGAU -CAC-AUU-G GCUCUGAGAC AAC-AGCCAA GAUGA-ACAU 1081 --UUAG---- UUCAUCCA-G CAGUG-GAGA AUA-UUAGUC AA-UGAUC-- ------GAAA 1141 ---------- ---GAUUG-- --AACUA-G- U-CA-UCU-A GA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------A--G 1261 AG-U---GA- ----AACU-- --------UU U--------- --AGUU---- AUA--G-CUC 1321 -CUUAA-AUU AA-------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- -----GAA-- ---------- ----AAUUUG 1501 A--------- --------UU C--------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- --UUAAU-UU 1681 UAUGUAAUUC U--UGCCAA- UU--UCCGUG -CCAGCAGCA GC-GGUUA-U ACGG-AU--- 1741 -AGA-AUA-- AGCGUUUAAC -AUAAUAA-A AAGGC-CUAA AA-AGUAUGU A-GAUG---- 1801 ---------- ---------- ------GAA- -----AAA-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ------AACA 1981 AAUC------ ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------U UU------UU CUAG--AGU- AAU-AAAGA- U-GUUUGU-- 2161 -----AGUA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUGU--CAAA --UAA-GGG- -AUCAAA--- 2281 UCC-GACAAU --CUUG-A-U G-A-GA-CU- GCUU------ ---------- ---------- 2341 ---------- ------A-AG U-AAAA--AC U-ACUUACA- -AUUAAU-U- --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CA- UU---GAG-- -AUA---C-- GAAGGCUUAG 2641 A-UCGCGAA- AGAGAUUAGA UAC--CU-CU -GUAGUC-UA AGCUGUAAAC GAU--UAU-- 2701 ---UG-CU-- -CUC--CCAA U-C------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- --------UU UUU------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---GAUUGG- -GU-UUAGU- 3001 ------GAAG ---------- -ACGGU-AAG CAAUAUG-CC UGG-GGAGU- --AC---UUU 3061 C--GCAA-GA UU-GAA-ACC CAAAACAU-U AGA------C GGUC-UUGGA ---AA-UC-- 3121 -CGCAGUG-A AUCAUGUUAU UUAAU-UAG- AUA-AUCCG- --CUAA---- ------AAAU 3181 CUUA--CCUU UCCUUAA--- ---------- -------AAC AA-UUA---- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ----GUUU-- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---UAAU-U- GU-U------ ---GGGU-AU 3601 UGCA-UG-GC -U----GUCU -UUA------ GUUA--AU-G UC--GUAA-- -GAU------ 3661 ---------- ---------- ---GAGG--- --------UU AAUU------ -----CCC-A 3721 -------UUA -AU-UAAC-G AAAG-CCUUC ---------- -----AAAGA A--------- 3781 ---------- --UUUGUUU- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- --UUCUUU-- 4321 ---------- ---------- -----GUGUU -AGU------ GAUAA----- -GCU--AACU 4381 UUU-UAGAGG -----GUUA- ----A-GA-- C-A----AGU CAAUAU-GAU CCU------- 4441 ---------U AUGG-AAAGG -GCUAU---- ---------- ---------- -----AGACG 4501 UGAUA-UAAA --AUCU---- --AAU--CCA ---AUAAUU- --UU---UAA UAUC------ 4561 ---------- -GAAA----- ---------- ---GAU--UG -----AA--- -GUAUUAUUA 4621 UAA-U-GG-- UUAGG----- AGAU------ --------UU AUU-CAGAU- -UUA--AA-- 4681 ---------- ---------- -UC-UG--UA AUUU--GA-- ---------- ---------- 4741 ------U-U- -UAA-U-G-- AAG-GAGGA- AUU-GCG-AG UA-AU-CACU A-AUCAU--- 4801 ---UACG--U A-GUGGU-GA AA-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- --UUUAUC-U CU--GAGA-U GUACUAACU- 4921 ACUC-GUC-A AGCG-CUGAA A---GUA-UU -A-AUC-UCU -------UGA A--------- 4981 ----GAAG-- --ACA----- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- -------UUC 5101 AUU------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ------UGU- ----UUUC-- ---------- 5221 -CC------A AGGUGUUGUG C--------A AUUAGUGUU- AAG-UCGAA- AU-AAGG--- 5281 -U-AAC--CG U--AGUGGAA GUU-G-CGGU UGAACUAAUU AAUUCAGGUU AACCCCCCCC 5341 C......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Allm.mac_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Allomyces macrogynus str. his1 3-35 (35oC) ATCC 46923 (fungus) -- mitochondrion. REFERENCE 1 AUTHORS Paquin,B., Forget,L., Roewer,I. and Lang,B. TITLE Molecular phylogeny of Allomyces macrogynus: congruency between nuclear ribosomal RNA- and mitochondrial protein-based trees JOURNAL J. Mol. Evol. 41, 657-665 (1995) COMMENT Corresponding GenBank entry: U23935|g777406 common_name= fungus isolate_name= his1 3-35 (35oC) NB: bases 94-117,160-281 not aligned well same seq as Allm.ma2_M BASE COUNT 547 a 305 c 417 g 454 u 3719 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 UUAAUUUUGA GUUUGA-UCU UGGCUCUGAA -UGAACGCU- AGCUA-UUG- A--------- 181 ---------- ---------- ---------- ---------- CUUAA-CACA UGC-UA-GUC 241 -A-GA-AU-- ---------- ---------- ---------- -UUUU----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- --AU--UC-- -GGC--GUAA AGGUG--AGU AA---AUCUA -GGAGAAAA- 481 -ACC--AAUG A---AG-U-G AGC-C-C-CC -------UUC G--------G G-----GGUU 541 U--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --UACA--UU 781 UUC------- ---GUUUG-- --------GA AAAA-CUA-- ---CCU---U AUA-AA---U 841 AGA--GUACG GAAACG--UG -UACGU---- -AU---GAAU C-AUGUAA-C AGGG-UUAAA 901 UCUCUGUAUG GUUAAUACGU UAUGAACUCG UUUAUAAG-- AUGUGCC--- ---------- 961 -UAGAAA--- ---------- GGA-UUAGAG -A-AAUCGAU GA--UCCUUA --GCUG---A 1021 UCU-GAAA-G GAUGGUCAGU -CAC-AGU-G GAACUGAAAU AAG-GACCAC ACAAUCAGAG 1081 U-AUUG---- -----GCA-G CAGUG-GGGA AUC-UUGGAC AA-UCAGC-- -----CAAUG 1141 C--------- ---GCUGG-- --AUCCA-G- U-CA-AAU-A GC-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AU-G 1261 GA-G------ AAA-AAGC-- --------AA U--------- --GCUU--GA UCU--C-CUA 1321 -AA----GGA AA-------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------U GAG------- --GAUAAUGA 1501 ---------- ---CUGA--- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------A A-UUUCC--U 1681 -GAAUAGUCC C--GGCAAA- U---CUCGUG -CCAGCAGCC GC-GGUAA-U ACGA-GA--- 1741 -GGG-GCG-- AGCGUGAGUC -CUAAUUA-U UCGGC-GUAA AG-AGUAAAA A-GGCG---- 1801 ---------- ---------- ------GUA- ------AUGG AAG----GCA UCCCCU---- 1861 GCCC------ -------GGG GGU------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------G UCUCCUGUAA 1981 UACAUAUACG ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ------GUCU UU-------- --------UG 2101 GUCCGUGU-G A-GA----UG UA------AA CUAG--AGU- AAA-AUAGA- G-GAGAGU-- 2161 -----AGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUGA--AAGU --GUA-AGG- -AUGAAA--- 2281 UCU-AGAAAU --AUUU-U-C A-G-GA-AU- AUCA------ ---------- ---------- 2341 ---------- ------AUAG C-GAAG--GC A-ACUCUCU- -UGGUUAUU- --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CG- CU---GAA-- -UUA---C-- GAAAGUGUGG 2641 G-GAGCAAA- UCAGAUUAGA GAC--CU-GA -GUAGUC-CA CACCCUAAAC GAU--GAA-- 2701 ---UG-UU-- -CGA--AGAG G--------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ------AUAA UAAUC----- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ----CC-CU- -UC-CUACC- 3001 ------UAAC ---------- -GGGUU-AAA CAUUCCG-CC U----GAG-- GAGUAA-GAU 3061 C--GCAA-GA UUGAAA--CU CAAAAGAU-U AGU------C GGUC-UCUCA ---CA-CC-- 3121 -AGCAGUG-A AGCAUGAAGU UUAAU-UUG- AUG-AUACG- --CAAA---- ------GAAC 3181 CUUA--CCUA UCUUUGACAA UUUC------ ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGGC-GU 3601 UGCA-UG-GC -U----GUCG -UCA------ GUUC--GU-G UU--GUGA-- -AACGU---- 3661 ---------- ---------- ---------- --------UU UAU------- ---------- 3721 ---------- -AC-GAAC-A AAAC-CCCAG -AAUUCAUUA UCCCAUUGAG GG-AUCGGC- 3781 -CCUC----- ---UUUCC-- -------GAG GGCUAUAAGU GAAAGGCC-- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- -----UCUCU -CCUUUGGAG 4321 GUGAAAAUAG UCUAGACUGA CUUCAGUCGG UCAGAGA--- CCAACA--UU UGUCUUUUGA 4381 AUU--CAGGG -----ACUA- ----C-GU-- C-A----AGU CAUUAU-GAC CCA------- 4441 ---------U AUAG-AUAGG -GCUAA---- ---------- ---------- -----AUUCG 4501 UGCCA-CUAG A-AGAAAU-- -ACAAA-GGG -----AAA-- --CA----AU AGAG------ 4561 --------GA UAAUUGAA-- ---------- ---CUCCGUU GAAC-UG--- ---GAGGAAA 4621 U---C-CC-- UAAA----AU UUCU------ -------UAG GUU-CAGAC- -AGG--AC-- 4681 ---------- ---------- -CU-UG--AA AUUC--AG-- ---------- ---------- 4741 ------G-U- -CCU-C-G-- AAG-UAGGA- AUU-GCU-AG UA-AU-CGUG A-AUCAG--- 4801 --CCACG--U C-ACGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- --AAAAUC-U GA--GAGA-U GAACUAACC- 4921 GUCC-GUC-A UAGU-CUGGG A---AUC-AA -U-CUG---- -GUUUGAAGU AGGAAAGAGA 4981 CC---AAG-A AAUAU----- --CAAAAUGG AUUGAAAAAU CC-------- ---GAGCACA 5041 CCCGUAGGGU GUUUUCUAAA UCUCGGUCAU GGUAUCGAAU CAAACCUCGA -AAGGGGUGU 5101 AAGACAUCAA CACCUUCAAG GCGACGUAAC ACGUCGAUUU UUGGGCAGAU UGAUGGAUGC 5161 UUAGA----- -----GGA-- ---UUGUUUU G-AA--AUA- -AG-CUU-AU CGUCGAUGUU 5221 CUAUUAUUA- --UUGAUUGG U--------G ACUGGAUUA- AAG-UCGUA- GC-AAGG--- 5281 -U-CGG--GU U--ACGGGAA CGU-G-GUCC GGAAUGGUUA AAUGA..... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Metr.sen_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Metridium senile (sea anemone) -- mitochondrion. REFERENCE 1 AUTHORS Pont-Kingdon,G.A., Beagley,C.T., Okimoto,R. and Wolstenholme,D.R. TITLE Mitochondrial DNA of the sea anemone, Metridium senile (Cnidaria): prokaryote-like genes for tRNA(f-Met) and small-subunit ribosomal RNA, and standard genetic code specificities for AGR and ATA codons JOURNAL J. Mol. Evol. 39, 387-399 (1994) COMMENT Corresponding GenBank entry: S75445 (bases 370 to 1560) common_name= sea anemone BASE COUNT 362 a 207 c 315 g 307 u 4251 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .ACGUAGUCU GAAAUUGGCA CUUAAUAUUA GAAAAUAAGU 121 AAAAUGGGUC CUUUGA-UUU UGGGGAAUGU AG-AAGGC-A AGUGG-CCC- U--------- 181 ---------- ---------- ---------- ---------- UUUAA-UACA UGCUAGUAUG 241 -UCUA-UC-- ----UGA--U -GGUC----- ---------- -AAAA----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 --GAUC--UA A-GG-AUAGC UCGUGCAGAC AGGUG--AGU AAA--UCCGG --AA-UC--- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- CAAAGUGCU- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ------GG-G --CCG-GA-- -GUCUUAUU- 901 --A------- ---------- ---------- ---GGUAG-A AGGUGGU--- ---------- 961 GUAAAAG--- ---------- AC--CAC-CU -U-GCU-GAA GA--UGGGUA --GCUU---- 1021 ----AGUUG- ------GAGC -CAC-ACU-U UCACUGAAAC AAG-GGGAAG GCUC--ACAU 1081 A--GAG---- -----GCA-G CAGUA-GAGA AUC-UUGUGC AA-UGCAC-- ------GAAA 1141 ---------- ---GUAUG-- --ACACA-G- A-GA-GGA-C AC-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------A UUUAAUUG-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ------AGCC C--GUCAAA- U---UAAGUG -CCAGCCGAC GC-GGUUA-G ACUU-AA--- 1741 -GGG-CUG-- -GUCUUUAUA -AGUAAAA-- -AGGC-GUAA AG-GAUGUGU A-GGCC---- 1801 ---------- ---------- AAGAAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -U----UGU- ---CCAAGAA G-GUAAAU-- 2161 -----GGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUUU--UCUG --GA--GCG- -GUAGAA--- 2281 UGU-GAGGA- --UAGA-A-A AUA-GA-AC- ACCUAAG--- ---------- ---------- 2341 ---------- ------G--U --UAAA---A CUAUUUACC- ---------- --------AC 2401 AAAA------ ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----UA-GG- CU---GAA-- -ACA---U-- GAAAGUGUGG 2641 G-GAGCAAA- CAGGAUUAGA GAC--CC-UG -GUAGUC-CA CACUGUGAAC UUU--GAA-- 2701 ---GA-U--- GA----UGC- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------U UA-------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ------GCA- ----G-ACC- 3001 ------CGAA A--------- -GGUAA-A-A UCUUCCG-CC UGA-GUAGU- --AC---GAU 3061 C--GCAA-GA UU-AAA-AUU C-AAAAACUU UGG------C UGUU-CACU- ---AUUUCG- 3121 -AUUAGAG-G AGCGUGUAGU UUAAU-UCG- AUG-GUCCG- --CGUG---- ------UUAC 3181 CUUA--CCCC AGCUUGAAUC UAUGAC---- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---CGGU-AU 3601 UGCA-UG-GC -C----GUCG -UAA------ GUCC--GU-G UG--UUAA-- -GCU-----A 3661 GAA------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GG-GACC-C AAUC-CGGGC ---------- ---------- ---------- 3781 ---------- ----GUUU-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -----GCCCG A----AGGA- ----A-GU-- C-A----GGU C-UUAU-GAU CCG------- 4441 ---------A AUGU-UGGGG --GAUU---- ---------- ---------- -----UUAUG 4501 CGCUA-CAUU --UUCUUAU- AUAAUGAGAG ------A--- --CU------ -UG------- 4561 ---------- -AAAGG---- ---------- ----UA---- -----AG--- -------C-- 4621 ----C-UCU- --AAA--GUA AGAG------ ---------- -UU-CGGAA- -GGU--CG-- 4681 ---------- ---------- -C---U--GU AAAA------ ---------- ---------- 4741 ------C-G- -ACU-G-G-- AAG-UUGGA- UUU-AAU-AG UA-AU-CGGA A-AGUAG--- 4801 ---GGCG--U U-CCGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UGGUACA-- AG--UGUU-A GCACAAAUU- 4921 GCCC-GUC-A CCUU-UACCU A---GGAUGG -UUAUU-CGG ---------- ---------- 4981 ----ACGC-- --C------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- -------UUC 5101 GGU------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- --------G- ----GU-U-- ---------- 5221 ---------A CGAAUGCCUA C--------G AGGUAAAGC- AAG-UCGUA- AC-AUGG--- 5281 -U-GAG--GG A--GGGGGAA CCC-U-CCCU UGCCCGGCCU UCUUUAUAAG GAGGGCUAUA 5341 AAAUUAAUUC CCUCUAUUCA GAGUGAUGAC AAACU..... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Asrn.pe3_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Asterina pectinifera (starfish) -- mitochondrion. REFERENCE 1 AUTHORS Asakawa,S., Himeno,H., Miura,K.-I. and Watanabe,K. TITLE Nucleotide sequence and gene organization of the starfish Asterina pectinifera mitochondrial genome JOURNAL Genetics 140, 1047-1060 (1995) REFERENCE 2 AUTHORS Jacobs,H.T., Asakawa,S., Araki,T., Miura,K.-I., Smith,M.J. and Watanabe,K. TITLE Conserved tRNA gene cluster in starfish mitochondrial DNA JOURNAL Curr. Genet. 15, 193-206 (1989) REFERENCE 3 AUTHORS Himeno,H., Masaki,H., Kawai,T., Ohta,T., Kumagai,I., Miura,K.-I. and Watanabe,K. TITLE Unusual genetic codes and a novel gene structure for tRNA (Ser AGY) in starfish mitochondrial DNA JOURNAL Gene 56, 219-230 (1987) COMMENT Corresponding GenBank entry: D16387|g517153 (bases 6002 to 6898) biol_source= ovary tissue common_name= starfish BASE COUNT 332 a 210 c 159 g 196 u 4545 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ......ACCG AUUUGG-UCC UAGUCCUAUU -C-UUAAUU- AUUUC-UAG- G--------- 181 ---------- ---------- ---------- ---------- -AUGA-UACA UGC-AA-GU- 241 ---------- ---------- ---------- ---------- -AAAAA---- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC--AAAA CAGUG----- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------AGU UAACACAGGC CCGCCCCCAG A--------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- GGAA-AUU-- 901 --A------- ---------- ---------- ---GCC---U ---------- -------UAA 961 CAACAGCAUC ---------- ---------- -A-GGACUAA AC--CUUU-- ---------- 1021 -------A-- ---------G ACAC--CU-A AGA-CGCUAA GA--ACCU-- -AUAC-ACCC 1081 --CACC---- -----CCU-G CAGUA-CUCA ACA-UUGUAC AA-UAAGC-- ------AAUA 1141 ---------- ---GCUUG-- --AUACA-G- C-CA-UAG-A AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- -------AG- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AUUAC C--GGUAAA- U---UAUGUG -CCAGCCACC GC-GGUUA-U ACAU-AA--- 1741 -GGU-CCU-- AGUUAAGAAU -----U---A GCGGU---AA AAAGGUGAUA A-AAC----- 1801 ---------- ---------- CAAAC----- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --CUGGGG-A 2161 CAACACU--- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ------AACU --CUA-GCA- -GUAAUA--- 2281 AGC--UUAC- --AGAA---- ---------- CACUUAGAAC AACAAAAACA UUAA------ 2341 ---------- ---------- ---------- --CCCCAG-- ---------- ---------- 2401 -CU------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------U- UUAUAGACCA -UCA---C-- UAAAGCUCAA 2641 A-AAUAAAC- UGGGAUUAGA UAC--CC-CA -CUAUA--UG AGCCGUAAAA AAC------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 -------CAC AA-------- ---------- -----CA-CC U----GAG-- AACUAC-AAA 3061 C--UAAA-GU UUAAAA--CU CAAAGGAC-U UGG------C GGUU-UUUUA --GAC-CUU- 3121 -CCUGGAG-G AGCUUGCCAU CUA-A-CCG- AUA-ACCCA- --CGAA---- ------AUAC 3181 CUCA--CCAG CCUUUGAACA UAC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AACC-UG 3601 UAUA-CC-AU -C----GUCG -UCA------ GUCU--AC-C CC--CCAA-- -GGG-----A 3661 A--------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AUAC-U UAAA-GAA-- ---------- ---------- ---------- 3781 ---------- --GAAAUUA- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------UUC -----AUUA- ----C-GU-- U-A----GAU CGAGGU-GCA GUU------- 4441 ---------A AUAG-GCUGG --GGAU---- ---------- ---------- -----GAGUG 4501 AGCUA-CAAC ---------- ---------- ---------- ---------- ---------- 4561 ---------- ACUAUAC--- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ----CAAAUC AAAAACACAA CUG-UGGAC- -AAU--CC-- 4681 ---------- ---------- -CU--U--GA AAG---AG-- ---------- ---------- 4741 ------G-G- -ACU-U-U-- AAA-CAGGA- UUC-AGC-AG UA-AU-GUUU A--ACAG--- 4801 ---AAAA--U A-AACAU-GA AG-------- ---------- ---------- ---------- 4861 ---------- ---------- -----CCCGU CUAAGCUC-U AA--AAUG-C GCACACAUC- 4921 GCCC-GUC-A CUCU-CGUC- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- -------CAU 5101 A--------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- -GAGGAGAA- AAG-UCGUA- AC-AAAG--- 5281 -U-AGG--CG U--AUUGGAA AAU-G-CGCC UGGCACAAAU .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Arbc.li3_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Arbacia lixula (black urchin) -- mitochondrion. REFERENCE 1 AUTHORS De Giorgi,C., Martiradonna,A., Lanave,C. and Saccone,C. TITLE Complete sequence of the mitochondriac DNA in the sea urchin arbacialixula: conserved features of the echinoid mitochondrial genome JOURNAL Mol. Phylogenet. Evol. 5, 323-332 (1996) COMMENT Corresponding GenBank entry: X80396 (bases 74 to 959) common_name= black urchin BASE COUNT 301 a 192 c 184 g 209 u 4556 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ......GCCG AUUUGG-UCC UAGUCCCAGU -U-UUGGCU- UUUUU-CGA- A--------- 181 ---------- ---------- ---------- ---------- AUGC--CACA UGC-AA-GCU 241 ---------- ---------- ---------- ---------- -AAAC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -AGC--AAUC CAGUG-AAGU UU---AACGC U--------- 481 -UAU--ACA- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------CUU CUUUCCAUAC UAAAAACAGA AA-------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---GGU---- -AU------- --AUUCUU-U UAGC-AUC-- 901 --A------- ---------- ---------- ---GGAC--- ---------- ---------U 961 AAUUUAGAU- ---------- ---------- ---GCC-CAC GA--CGCUAA --GC------ 1021 ----AAAA-- --------GC -CAC------ ---------- ---------- ---------- 1081 ---------- ----GACU-G CAGUG-CUAA ACA-UUGGA- ---CCAUACG -------UAC 1141 ---------- -CGCUCGG-- --AUCCA-G- U-AA-ACG-A AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ----ACAAA- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----GAAGG A--GGUAAA- A---UACGUG -CCAGCCACC GC-GGUUA-A ACGU-AU--- 1741 -GCC-CUAA- AGUAAA-ACU A----G---A CCGGU-GUAA AG-GGUGGUU A-GAA----- 1801 ---------- ----UGUUAC AGCCUA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --GCUA---U 2161 AGUU------ ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- --UU--UAUG --AUA-GUG- -GUAGAA--- 2281 AAC--UUA-- --CCUA-A-A ---------- AUAAAAUAGC ---------- ---------- 2341 ---------- ---------- ---------- ----UAGC-- ---------- ---------- 2401 -CUAUAC--- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------U- UU---GAC-- -CCA---C-- GAAAACUAGG 2641 --CAUAAAC- CAGGAUUAGA UAC--CC-UG -UUAUAC-CU AGAAGUAAAC ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---AACCUAU AAA------- ---------- -----CA-CC A----GAG-- AACUAC-UAA 3061 C--UUAAGGU UUAAAA--CU CAAAGGAC-U UGG------C GGUU-UUCCA --AAC-CUC- 3121 -CCUGGAG-G AGCUUGCCGU CGG-A-UCG- AUA-AUCCA- --CGCU---- ------AUAC 3181 CUUA--CCGA UUCUUGCCUU CAC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCC-UG 3601 UAUA-CC-AU -C----GUCG -AAA------ GUUU--AC-U UC--CUAA-- -GAA-----A 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-UAAC-A CAAA-GAG-- ---------- ---------- ---------- 3781 ---------- ----CAAU-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------CUC -----UUCA- ----C-GU-- C-A----GAU CAAGGU-GCA GCU------- 4441 ---------U AUGA-AUCGG --GGAC---- ---------- ---------- -----AGGUG 4501 AGCUA-CAAU --GUU----- ---------- ---------- ---------- ---------- 4561 ---------- AAUAAA---- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -AAC------ ---------- CAG-UGAAA- -UAAG-GG-- 4681 ---------- ---------- -UU--G--AA AAUA--GU-- ---------- ---------- 4741 ------C-C- -UUA-A-G-- AAA-UUGGA- UUC-AGC-AG UA-AG-CCCC A--GAAG--- 4801 ---AGAA--U G-GGGCU-GA AG-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AAAGCUC-U GG--AAUG-C GUACACAUC- 4921 GCCC-GUC-A CUCU-CGCCU A---GCC--- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- --------AA 5101 A--------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- --------GG U--------A AGGGGAGAA- AAG-UCGUA- AC-AUAG--- 5281 -U-AGG--UA U--ACCGGAA GGU-G-CACC UGGAAAAU.. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Parc.liv_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Paracentrotus lividus (sea urchin) -- mitochondrion. REFERENCE 1 AUTHORS Cantatore,P., Roberti,M., Rainaldi,G., Gadaleta,M.N. and Saccone,C. TITLE The complete nucleotide sequence, gene organization, and genetic code of the mitochondrial genome of Paracentrotus lividus JOURNAL J. Biol. Chem. 264, 10965-10975 (1989) COMMENT Corresponding GenBank entry: J04815|g342913 (bases 74 to 956) common_name= sea urchin BASE COUNT 323 a 194 c 168 g 193 u 4564 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ......ACCG AUUUGG-UCC UAGUCCUAAC -U-UUAGCU- AAUUU-UUA- G--------- 181 ---------- ---------- ---------- ---------- UUGC--CACA UGC-AA-GCC 241 ---------- ---------- ---------- ---------- -CAAU----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -GAC--AAAC CAGUG-AAGU AAA--AAUUU ---------- 481 -UGG--UCU- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------CCC CACCUAAAAA GAGACA---- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---GGA---- GCA------- --AAAAUU-C UAGU-AUC-- 901 --A------- ---------- ---------- ---GGC---- ---------- ---------C 961 CUAACCAAU- ---------- ---------- ---GCC-CAC GA--CACUAA --GC------ 1021 ---AAUAC-- --------GC -CAC------ ---------- ---------- ---------- 1081 ---------- ----AACU-G CAGUA-CUAA ACA-UUAGAC AA-UCGGA-- ------AAAA 1141 ---------- ---UCCGG-- --AUCUA-G- C-AA-AAA-A AU-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AAG- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----CAAGG G--GGCAAA- A---UACGUG -CCAGCCACC GC-GGUUA-U ACGU-AC--- 1741 -UUC-CUAA- AGCUAAAUA- -----A---A ACGGU-AUAA AG-GGCGGUU A-GAA----- 1801 ---------- --------AA AUAGAU---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UUGACU-G 2161 UAGC------ ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- --UC--CCAG --CUA-GUG- -GUAAAA--- 2281 AAC--UAAU- --CUGA-G-A ---------- AGAAACAUA- ---------- ---------- 2341 ---------- ---------- ---------- --AGUCAA-- ---------- ---------- 2401 -AAUAUUUA- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------U- UU---GAAC- -CCG---C-- GAAAACUAAG 2641 A-CCUAAAC- CAGGAUUAGA UAC--CC-UA -CUAUAC-UU AGACGUAAAC A--------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 -----ACC-U AAG------- ---------- -----CA-CC A----GAG-- AACUAC-AAA 3061 C--UAAAAGU UUAAAA--CU CAAAGGAC-U UGG------C GGUU-UUCCA --UAC-CUC- 3121 -CCUGGA--G AGCUUGCCAU UGA-A-UCG- AUA-AUCCA- --CGAA---- ------ACAC 3181 CUCA--CCAA CUUUUGUAAA UC-------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCU-UG 3601 UAUA-CC-AU -C----GUCG -UAA------ GUCU--AC-U UC--UUAA-- -GAA-----A 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-UGGC-U CCUA-GGGA- ---------- ---------- ---------- 3781 ---------- ----AAA--- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ------UUCC -----CAGA- ----C-GU-- C-A----GAU CAAGGU-GCA GCA------- 4441 ---------C AUAA-GCUGG --GAAU---- ---------- ---------- -----GAGUG 4501 AGCUA-CAAU --GUU----- ---------- ---------- ---------- ---------- 4561 ---------- --UUU----- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -AAC------ -------GAC CAG-CGAAA- -AUA--GA-- 4681 ---------- ---------- -AA--U--GA AACA--AU-- ---------- ---------- 4741 ------U-C- -UUU-A-G-- AAG-UUGGA- UUC-AGC-AG UA-AG-CCCC A-AAUAG--- 4801 ---AAAA--U G-GGGCU-GA AA-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AGAGCUC-U GG--AAUG-C GUACACAUC- 4921 GCCC-GUC-A CUCU-CGCCU A---GCU-U- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- -------AAC 5101 UU-------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- -------AAG U--------A AGGGGAGAA- AAG-UCGUA- AC-ACAA--- 5281 -U-AGG--CA C--ACCGGAA -------GCC UGGAAAAU.. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Stro.pu3_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Strongylocentrotus purpuratus (sea urchin) -- mitochondrion. REFERENCE 1 AUTHORS Qureshi,S.A. and Jacobs,H.T. TITLE Two distinct, sequence-specific DNA-binding proteins interact independently with the major replication pause region of sea urchin mtDNA JOURNAL Nucleic Acids Res. 21, 2801-2808 (1993) REFERENCE 2 AUTHORS Jacobs,H.T., Elliott,D.J., Math,V.B. and Farquharson,A. TITLE Nucleotide sequence and gene organization of sea urchin mitochondrial DNA JOURNAL J. Mol. Biol. 202, 185-217 (1988) COMMENT Corresponding GenBank entry: X12631|g296545 (bases 74 to 951) common_name= sea urchin BASE COUNT 287 a 190 c 197 g 204 u 4564 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ......GCCG AUUUGG-UCC UAGUCCCAAU -C-UUAACU- ACUGU-UGA- G--------- 181 ---------- ---------- ---------- ---------- GUGC--CACA UGC-AA-GUC 241 ---------- ---------- ---------- ---------- -CACU----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -AGC--GAAC CAGUG-AAAU AGA--AUCUU ---------- 481 -AUU--CCC- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------UAA AACCUGGAAA GAAGAAAA-- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---GGG---A AAGAG----- --AAG-AC-- CAGU-AUC-- 901 --A------- ---------- ---------- ---GGC---- ---------- -------ACU 961 AAGUAGAUGA ---------- ---------- ---GCC-CAC GA--CACUAA --GC------ 1021 -----AAG-- ---------- ---------- ---------- ---------- -AGAG-UCUG 1081 --CUCA---- -----ACU-G CAGUG-CUAA AUA-UUAGAC AA-UCAGA-- ------AAAA 1141 ---------- ---UCCGG-- --AUUUA-G- C-AA-GGG-A AG-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------UAU- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AAAGG A--GGUAAA- A---UACGUU GCCAGCCACC GC-GGUUA-U ACGU-AA--- 1741 -UUC-CUAC- AGUUAAAUA- -----G---U ACGGU-GAAA AG-GGU-GUU A-GAA----- 1801 ---------- --------AA GUUCA----- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UUGGUU-G 2161 UAGC------ ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- --UU--UGGG --CUA-GCG- -GUAUAA--- 2281 UUU--UAAU- --CCCA-C-A ---------- CGAUACCCUU AC-------- ---------- 2341 ---------- ---------- ---------- --CCCCAA-- ---------- ---------- 2401 -AUUAAGCA- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------U- UU---GAAG- -CCA---C-- GAAAUCUAAG 2641 G-CCUAAAC- CAGGAUUAGA UAC--CC-UG -UUAUAC-UU AGA------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- A----GUG-- -UAACA-CCC 3061 C--UAAA-GU UCAAAA--UU CAAAGGAU-U UGG------C GGUU-UUCCA --AAC-CUC- 3121 -CCUGGA--G AGUUUGCCAU UGA-A-UCG- AUA-ACCCA- --CGAU---- ------CCAC 3181 CUCA--CCAA UUUUUGUAAC ACC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCU-UG 3601 UAUA-CC-AU -C----GUCG -UAA------ GUCU--AC-U UC--UUGA-- -GAA-----A 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-UGAC-U UUAA-GGG-- ---------- ---------- ---------- 3781 ---------- ----AGAA-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------CCC -----UGGA- ----C-GU-- C-A----GAU CAAGGU-GCA GCC------- 4441 ---------U AUAA-GUUGG --GGAU---- ---------- ---------- -----AGGUG 4501 AGCUA-CAAU --GUUU---- ---------- ---------- ---------- ---------- 4561 ---------- -GAAC----- ---------- ---------- ---------- ---------- 4621 ---------- ---------- AAAC------ ---------- CAG-UUGGA- -AGGA-GG-- 4681 ---------- ---------- -GA--U--GA AAU---AC-- ---------- ---------- 4741 ------C-C- -CUC-G-G-- AAU-UUGGA- UUC-AGC-AG UA-GG-CCCA C--UAAG--- 4801 ---AGAA--U G-GGGCU-GA AA-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AGAGCUC-U GG--AAUG-C GUACACAUC- 4921 GCCC-GUC-A CUCU-CGCCU A---GU--UA ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- -------AGA 5101 U--------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ------UACA C--------A AGGGGAGAC- AAG-UCGUA- AC-ACAA--- 5281 -U-AGG--CA C--ACCGGAC GCG-A-AAAU GCCCCUAUAG UUG....... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Myti.edu_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Mytilus edulis (blue mussel) -- mitochondrion. REFERENCE 1 AUTHORS Hoffmann,R.J., Boore,J.L. and Brown,W.M. TITLE A novel mitochondrial genome organization for the blue mussel, Mytilus edulis JOURNAL Genetics 131, 397-412 (1992) COMMENT Corresponding GenBank entry: M83756|g342471 (bases 793 to 1737) common_name= blue mussel BASE COUNT 309 a 125 c 214 g 297 u 4497 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......AGU 121 CUGUAGGAGG GUUUGA-UUA UGGCCU-UAA -A-UUUAUA- GACAA-AAU- G--------- 181 ---------- ---------- ---------- ---------- CUU---CUCA UGA------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------UUC UAAAUGCGAG CUUGAACAGA UUAAGGAUAA 721 GUUCAACA-- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------U CAGUG-GGGA AAA-UUGGUU AA-UAAAG-- ------GAA- 1141 ---------- ---CUUUA-- --ACCCA-G- C-U--UUU-U GA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------UAA- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----UUUCG G--GGUUAA- UUGAUGAAUG -CCAGCAGCC GC-GGUUA-G AUUC-AG--- 1741 -UUC-GAA-- UAUAAAUUUA -----A---- GCGGA-UUG- ---GUUA--- ---------- 1801 --------GA GUCAAUGUUG GGUCUA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAAAAC-U 2161 AUA------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- AAAA--AACU AUAGGUGCA- -GUGUAA--- 2281 UGU--UAAC- --GGUU-U-U U-U------- GUGGUUA--- ---------- ---------- 2341 ---------- ------U-AU U-CCU---GA A-GUUUUA-- ---------- ---------- 2401 -GUGAGUUUC ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- -UAA---C-- GAAUCUAUGA 2641 A-GUGAAAC- CAGGAUUAGA UAC--CC-UG -UUAU-C-CA UAGUUUAAAA C--------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 --------AG AAG------- ---------- -----UU-CC U----CUU-- AACUAA-ACA 3061 --UUUGGU-U GUCAAA--GA GAAAUAAA-U AGG------C GGUG-UCUGA --GAU-AGAA 3121 -AACAGGG-G AUCCUGGGUG UUA-A-AGG- AUA-ACCCA- --CCUA---- ------CAUU 3181 UGAG--CCUU GUCUUAUUAG UG-------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---CGUG-UG 3601 UAUG-GUUGU -U-----UAC -UCU------ AAUA--UG-G UG--AGUG-- -UCC-----G 3661 GGUAAA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -AA-UUUU-G GUUA-UUG-- ---------- ---------- ---------- 3781 ---------- ---------- ---------- --CUAAAGUU AGGGUUUAUU UUAUUGGUUA 3841 AGUUUGGUAA AAUAAGUUAG CUUUAGCUAG AUGCAGCUAG UAGAAGGGGU UUAU----UC 3901 ACCUUUGUAG CACAGCUU-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------CAA A----AAUA- ----A-UU-- C-A----GAU UGACAU-GCA GCU------- 4441 ---------U AUGA-UAAGG ---UUA---- ---------- ---------- -----AUCUG 4501 GGAUA-CAGU --UG------ --CA---GCU ----UAAGC- --AAUAGU-- -UUA------ 4561 ---------- -AAUU----- ---------- ---UAA---- -ACUAUU--- -----AAGU- 4621 ----A-GU-- AUAAAU---- --AA------ --------UC UAA-CGAAU- -AAG--GU-- 4681 ---------- ---------- -AA-----GA AAAC--UU-- ---------- ---------- 4741 ------G-A- -CUU-U-G-- AAG-AAGGA- CUU-GUA-AG UA-AG-GGUU G-AAAAU--- 4801 ---AAAA--C C-GCCCU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ----ACAA-U CA--GAUG-A GUACUAAUC- 4921 GCCC-GUC-G CUCG-CGGG- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- -------GAA 5101 A--------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- -CCUGUGAA- AAG-UCGUA- AC-AAGG--- 5281 -U-AGC--AG U--AACGGAA GUU-G-UUGC UAGGCCAUAA UAU....... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Pctn.max_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Pecten maximus (mollusc) -- mitochondrion. REFERENCE 1 AUTHORS Rigaa,A. and Sellos,D. TITLE 12 S rRNA sequence from the marine mollusc pecten maximus JOURNAL Unpublished (1992) COMMENT Corresponding GenBank entry: X67246|g10005 (bases 1 to 755) common_name= mollusc BASE COUNT 211 a 136 c 198 g 210 u 4687 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... ..AAGCUU-- --GAUUAAG- CUAU--UG-U UUAUU----- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGAGG A--GUCCAA- C---CAGGUG -CCAGCAGUC GC-GGUUA-A ACCU-GAG-- 1741 UAAC-UCA-- AGUCAAGUGG ----GA---- -CAGU-GUAA AA-GGUGGUU AGACAG---- 1801 ---------- ---------- ----UCUGC- -----UUUGU A------UUU U--------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- -------UAU 1981 UA-------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ----AAAA-- --------CA AA----U-GU AAUU--UUU- GAA---AAA- A-GAAGA--U 2161 C----GACC- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- -CGA--GGAA --GUA-GGG- -GUGCAA--- 2281 UCU-UAUGUA U-UUCC-U-U G-A-GG-GA- A--------- ---------- ---------- 2341 ---------- ------G--G G-GCA---CA U--UCUUCU- -UU------- --------AG 2401 G--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- -------CU- G----AGU-- -CCA---CGG AACCGGUUAA 2641 C-UGAAGAC- AUGGAUUAGA UAC--CC-AU -U--U-A-UU GCCGAUGUAA ACUUUGCU-- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---UUUCAGU GC-------- ---------- --AGCUG-CU U----GGG-- UACUAC-GAG 3061 C--GAGU-GC UUAAAA--CU CAAAGAAC-U UGG------C GGCU-UGUUA ----A-CUA- 3121 -CCUAGGG-G AAUAUGCGCC UUAAU-CCG- AUG-AUCCC- --CGUC---- ------AUAU 3181 CUUA--CUGA GUCUUGAAAA AGUGC----- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCU-GG 3601 UGUA-UU-GC -C----GUUG -UCAG----- CUUG--UUGU UC--GAGCAA AGAG-----A 3661 AACAGGCUU- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -AA-UGGA-U CCCG-GUGA- ---------- ---------- ---------- 3781 ---------- ---UAAUCU- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ------UCAC -----GGGAA UCCAUGAAUU C-A----GGU CGUAAU-ACU GCC------- 4441 ---------U AUGG-CUCAA ---GGG---- ---------- ---------- ----AGCGGG 4501 UGUUA-CAAU --UCA----- ---------- ---------- ---------- ---------- 4561 ---------- -UAUU----- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -UGG------ --------AA UUA-CGGAU- -CCU--CA-- 4681 ---------- ---------- -UUGUG--GA AUCU------ ---------- ---------- 4741 ------U-G- -GGG-U-G-- AAG-GUGAA- CUU-AGG-AG UA-AG-GAGA G-AUUAA--- 4801 ---UGUG--C U-UUCCU-GA AC-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AUGAAUC-U AA--CUCG-U GUACAAACU- 4921 GCCC-GUC-G CUCU-CGGC- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- -------GAG 5101 A--------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- -GCUGAGAU- AAG-UCGUA- AC-AAGG--- 5281 -U-AGG--GG U--ACUGGAA GGU-G-CGCC CUGAGAAA.. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Kath.tun_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Katharina tunicata (black chiton) -- mitochondrion. REFERENCE 1 AUTHORS Boore,J.L. and Brown,W.M. TITLE Complete DNA sequence of the mitochondrial genome of the black chiton, Katharina tunicata JOURNAL Genetics 138, 423-443 (1994) COMMENT Corresponding GenBank entry: U09810|g557273 (bases 11506 to 12331) complement common_name= black chiton BASE COUNT 317 a 117 c 112 g 279 u 4617 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ......AUAA AUUUGG-UUC UAGUUUAUA- -A-UUAAUU- AAUUC-U-UU U--------- 181 ---------- ---------- ---------- ---------- AGAAA-CACA UGA-UA-GU- 241 ---------- ---------- ---------- ---------- --UUU----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC--CGAA GCUGU--AAA G----AUAA- ---------- 481 ---------- ---------A AAU-A----- -------AAC UU-------- ------UAUU 541 U--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --G-----UA 781 UA-------- ----AAU--- ---------- UAUA------ ---AAA---A AU-------A 841 UUU------- AUUUUU---- ------AAGA UAUCAA---- ---UU-AU-- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -UUCAAG--- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- -ACA------ ---------- ---------- ---------- 1081 ------UCGC UUACCACU-U CAGUG-UUAA AGA-UUAAA- AA-CAAAA-- ------GARA 1141 ---------- ---UUUAG-- --GUUUA-G- AAAU--AG-- AU-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------UUC- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGAAC U--AGUUAA- A---UUUGUG -CCAGCAACU GC-GGUUA-U ACAA-AA--- 1741 -GGU-UCA-- AGUUAAUCUA -----A---- ACGGU-AAAA -G--GUAGUU A-UUUUU--- 1801 ---------- ---------- ---AUA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --AAGAUG-- 2161 UCAGAUUAU- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- AAAA--AAUG ---AA-AAA- -GUAAAA--- 2281 UUU---A--- --CAUU-U-U U-U------- UAUCACCUU- ---------- ---------- 2341 ---------- ---------- ---------- --CUUCUU-- ---------- ---------- 2401 -ACUA----- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ------AAA- AA---GAC-- GCUA---C-- AAAAAUUUUA 2641 A-CUAAAAC- UGGGAUUAGA UAC--CC-CA -CUAU-U-AA AAAAUUAA-- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ----AUCAUU A--------- ---------- -----CA-CC A----GAG-U AUUACG-AAU 3061 A--AAUAUUG UUUAAAA-CU UAAAGAAC-U UGG------C GGUG-UCUUA ---UUCCUU- 3121 -UCUAGGG-G AACCUGUAUU UUA-ACUCG- ACA-ACCCG- --CGCU---- ------UUAC 3181 CUCA--CUUU ACUUAAAUUU UACU------ ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGUU-UG 3601 UAUA-CU-UC -C----GUCA -UAA------ GUU------- ---------- ---------A 3661 ACUACUCAAG AC-------- ---------- ---------- ---------- ---------- 3721 ---------- -----AAC-- ---------- ---------- ---------- ---------- 3781 ---------- ---UCUCUAU ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- -------UA- ----U-GA-- C-A----GGU CAAAAC-GCC AGU------- 4441 ---------U AUAG-UAAAG --AUAAU--- ---------- ---------- -----AUUAG 4501 GGUUA-CAAU --UUA----- ---------- ---------- ---------- ---------- 4561 ---------- -AAUU----- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -UAA------ ---------A AUA-CGGAA- -AUC--UA-- 4681 ---------- ---------- -U---U--GC AAUU---A-- ---------- ---------- 4741 ------U-A- -UUU-AAU-C AAG-GCGGA- CUU-AGA-AG UA-AA-AAUA A-AUUAU--- 4801 --GAACA--U U-AUUUU-GA AA-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- --AAGCUC-U AA--GACG-U GUACAUAUC- 4921 GCCC-GUC-A CUCU-CUUU- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- -------UUA 5101 A--------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- -AAAGAGAU- AAG-UCGUA- AC-AUAG--- 5281 -U-AGG--AG U--AGCUGAA GCU-G-UUCC U......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Caen.ele_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Caenorhabditis elegans (nematode) -- mitochondrion. REFERENCE 1 AUTHORS Okimoto,R., MacFarlane,J.L., Clary,D.O. and Wolstenholme,D.R. TITLE The mitochondrial genomes of two nematodes, Caenorhabditis elegans and Ascaris suum JOURNAL Genetics 130, 471-498 (1992) COMMENT Corresponding GenBank entry: X54252|g13988 (bases 898 to 1594) common_name= nematode BASE COUNT 250 a 68 c 115 g 264 u 4745 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .....UAAAG UUUUCUUUCA 121 GGGAAUUAAA AUUUGA-UCA UGGUUUAAGA -U-GAUUUA- -AAAU-GGU- A-UUAUCUAA 181 AUUUGAUUUA CAGAGUAGGC AAUAAAAAUU UACCUC---- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- G-G--CAA-U UU-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AU-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----CGCUU G--UAAAAU- A---CUUGUU -CCAGAAUAA UC-GGCUA-G ACUU-GU--- 1741 -UAAAGCUUG UACUUUAAUU ---------G AUGUU-AAUU AU-GAAA--- ---------- 1801 ---------- ------UUAU UAUAUU---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 -----UUCU- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUUA--GAUC ------UAUG -GUAGAA--U 2281 UUG------- --GAUU-U-A U-A-UU-AG- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 -UGAAUUUUC AUAAU----- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- --UU---U-- AAGA--UUUG 2641 UUGAACAAA- GCAGAUUAGU AC---CU-GG -UUAGAC-AA A--AA----- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 --------UU AA-------- ---------- -----AA-GA G----CAG-- GAGUA--AAG 3061 U---UGU-AU UU-AAA--CU GAAAAGAUAU UGG------C AGACAUUCUA ---AA-UU-- 3121 -AUCUUUG-G AGGCUGAGUA GUA-A-CUG- AGA-ACCCU- --CAUU---- -------AAC 3181 UA----CUUA AUUUUUU--- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---GACU-CG 3601 UGUA-UG-AU -C----GUUU ---A------ UUUU--A-UU CU---UAA-- -GGA-----U 3661 UAUAA----- ---------- ---------- ---------- ---------- ---------- 3721 ---------- --U-AAAA-- ---------- ---------- ---------- ---------- 3781 -------AAU UUUUAAUUUA UUA------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ----A-AA-- U-A----GAU AUAUAC-CCG GUU------- 4441 ---------U AUGAUUUAAG --AAAC---- ---------- ---------- -----AUUUG 4501 GCCUA-CAAU --AU------ ---------- ---------- ---------- ---------- 4561 ---------- --UUU----- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --AU------ ---------A UUA-UGGAU- -UUU--AG-- 4681 ---------- ---------- -UU--U--UA GUU---AA-- ---------- ---------- 4741 ------C-U- -AAA-U-G-- AAA-UUGUA- AAA-GAC-AG UA-AA-AAAU U-C-UUA--- 4801 ---AU-G--U A-UUUUU-GA AG-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- --AUUAUC-U AG--AAGU-G GUACAAAUC- 4921 AUCC-AUC-A AUU------G ----CCC--- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- --------AA 5101 A--------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- --------GG G--------- G-----AGU- AAG-UUGUA- GU-AAAG--- 5281 -U-AGA--UU U--AGGGGAA CCU-G-AAUC UAGUAAUA.. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Ascr.suu_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Ascaris suum (nematode) -- mitochondrion. REFERENCE 1 AUTHORS Okimoto,R., MacFarlane,J.L., Clary,D.O. and Wolstenholme,D.R. TITLE The mitochondrial genomes of two nematodes, Caenorhabditis elegans and Ascaris suum JOURNAL Genetics 130, 471-498 (1992) COMMENT Corresponding GenBank entry: X54253|g13971 (bases 901 to 1601) common_name= nematode BASE COUNT 224 a 64 c 133 g 280 u 4741 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... ...UUUAAGU UUUACUUAUA 121 AGGAUUUAAA AUUUGA-UUA UGGUUUUAGG -U-AGUGUU- -AUAAUGAU- G-UUAUCUGU 181 UUUGGAUUCA UUGAAUGGGC AAUAAUUUUU UACCCUGG-- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- C-A--UUU-U GU-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----CGUUU G--UAUAAA- U---UUUGUU -CCAGAAUAA UC-GGCUA-G ACUU-UA--- 1741 -UAA-ACUUG AACUCUAAUU ---------G AUGUU-AGUU UA-GGGU--- ---------- 1801 ---------- -------UUU GUAAAU---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 -----AUAUC ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUGU--UUUU ------UAGG -GUGAAA--U 2281 CGG------- --GAAU-U-U UUAUUG-AU- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 -AAUGCUCUA AUC------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- --UU---U-- AAGA--UUUG 2641 GUGAAUGAA- UCAGAUUAGU AC---CU-GA -UUAAAC-AA A--AA----- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 --------UU AA-------- ---------- -----AA-GA G----CAG-- GAGUA--AAG 3061 U---UGU-AU UU-AAA--CU GUAAGAAUAU UGG------C AGGU-UUUUA ---AA-UU-- 3121 -AUCUUUG-G AGGUUGAGUA GUA-A-UUG- AGA-ACCCU- --CAUU---- -------AAC 3181 AA----CUUU UACUGUA--- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---GGCG-CA 3601 UGUA-UG-AU -C----GUUU ---A------ UUUU--A-UU CU---UAA-- -GGA-----U 3661 UGUAAUUU-- ---------- ---------- ---------- ---------- ---------- 3721 ---------- --U-AGAU-- ---------- ---------- ---------- ---------- 3781 -------UAA UUUAUUUUCU GUAA------ ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ----A-AA-- U-A----GAU AAAUAC-UUG GUG------- 4441 ---------U AUGU-AAAAG -AUUUA---- ---------- ---------- -----AUUUG 4501 ACCUA-CAAU --AU------ ---------- ---------- ---------- ---------- 4561 ---------- --GCU----- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --AU------ ---------C UUG-UGGAU- -ACU--UU-- 4681 ---------- ---------- -UU-----UA GU----AG-- ---------- ---------- 4741 ------A-A- -GGU-U-G-- AAA-AUGUA- AAA-GAC-AG UA-AG-UUUU U-U-UUU--- 4801 ---AU-A--U A-AAGCU-GA AG-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- --UUUAUU-U AA--AAAC-G GUACAAAUC- 4921 AUCC-AUC-A AUU------G ----CCU--- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- --------UC 5101 A--------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- --------GG G--------- G-----AGU- AAG-UUGUA- GU-AAAG--- 5281 -U-AGA--GU U--AGGGGAA CCU-G-GCUC UAGUAAUUA. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Lumb.ter_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Lumbricus terrestris (common earthworm) -- mitochondrion. REFERENCE 1 AUTHORS Boore,J.L. and Brown,W.M. TITLE Complete sequence of the mitochondrial DNA of the annelid worm Lumbricus terrestris JOURNAL Genetics 141, 305-319 (1995) COMMENT Corresponding GenBank entry: U24570|g984290 (bases 10177 to 10961) common_name= common earthworm BASE COUNT 275 a 170 c 147 g 193 u 4657 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....UCAGU UUGAUU-CUG GCUGACAAUU -U-AGCUCU- CUUAA-A-CU A--------- 181 ---------- ---------- ---------- ---------- -AUA--UACA UGU-AA-GU- 241 ---------- ---------- ---------- ---------- -CUAA----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC-UACCC CGCAC--CAC -----AUAU- ---------- 481 ---------- -----AAA-C CCU------- -------AAA U--------- -------GGA 541 G--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --AAUAA-CU 781 A--------- ----UAU--- ---------- -UAGACAUAU CUC------- ---------- 841 ---------- ---------- ---------- ---------- ---AU-AU-- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- -GGU------ ---------- ---------- ---------- 1081 ---------- AAAGCGUC-A CAGUA-AGAA AAU-CUACC- UU-AUUGC-- ------AAAA 1141 ---------- ---GCAAG-- --AGCUG-G- UUAU--UA-A GA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------UC-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGAGU U--GGCAAU- A---UUCGUG -CCAGCUGCC GC-GGUUA.. .......... 1741 .GAC...... .GA--UAAAC -----UC--- AAGC--UAAU -U--CAUAUA A--------- 1801 GACUAAUUGC AAGGCGAUCU AAAAAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ------UAAC --UCA--AA- -GUCUAA--- 2281 UU---UA--- --UAUA---- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 -AUCCGAGAC CCGUAAACGC CUAUUUAC-- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- -CGU---A-- -AAACCAUAG 2641 A-CUAAAAC- ACGGAUUAGA UAC--CC-GU -CUAU-U-UA UGGAG----- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ----UAACUA ---------- ---------- -----AA-GU C----GAA-- AAAUAC-GAA 3061 C--UACA-GU UUAAAA--CU UAAAGAUU-U UGG------C GGUG-UCUUA ----U-CAA- 3121 -CCCAGGG-G AACCUGUCUC AUA-ACUCG- AUA-ACCCA- --CGA----- ------CACU 3181 CUCA--CCCU CCCUAGACUA AAC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCU-UG 3601 UGUA-CU-GC -C----GUCG -UAA------ GCAC--AC-C UC--UAAA-- --AG-----C 3661 CAAGGAA--- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-GUGC-A AUAA-UGA-- ---------- ---------- ---------- 3781 ---------- ----UUGUC- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------UCA -----CCCA- ----C-GU-- C-A----GGU CAAAGU-GCA GCC------- 4441 ---------C AU-G-GACGG ---AGA---- ---------- ---------- -----UGAUG 4501 GGUUA-CACC ---------- ---------- ---------- ---------- ---------- 4561 ---------- UAAACAAA-- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------G AUA-CGGAA- -UAC--AG-- 4681 ---------- ---------- -C---A--UU AAGA---G-- ---------- ---------- 4741 ------C-U- -GUG-U-A-- AAG-GAGGA- CUU-GAG-UG UA-AC-AGUA U--UACA--- 4801 ---AAAU--- U-AAAGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -CUGAAUC-U AA--GACA-U GCACACAUC- 4921 GCCC-GUC-A CUCU-CGCC- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- -------UAA 5101 A--------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- -GGCGAGAU- AAG-UCGUA- AC-AAAG--- 5281 -U-AGG--UG U--AACGGAA GUU-G-CCCC UGU....... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Arte.fra_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Artemia franciscana (brine shrimp) -- mitochondrion. REFERENCE 1 AUTHORS Valverde,J.R., Batuecas,B., Moratilla,C., Marco,R. and Garesse,R. TITLE The complete mitochondrial DNA sequence of the crustacean Artemia franciscana JOURNAL J. Mol. Evol. 39, 400-408 (1994) REFERENCE 2 AUTHORS Perez,M.L., Valverde,J.R., Batuecas,B., Amat,F., Marco,R. and Garesse,R. TITLE Speciation in the Artemia genus: mitochondrial DNA analysis of bisexual and parthenogenetic brine shrimps JOURNAL J. Mol. Evol. 38, 156-168 (1994) COMMENT Corresponding GenBank entry: X69067|g505262 (bases 13289 to 14000) complement common_name= brine shrimp BASE COUNT 228 a 122 c 153 g 209 u 4730 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ......AAAA GUUUGA-UUC UAGCUAGUUU -A-UUUACU- CUUUC-U-AC G--------- 181 ---------- ---------- ---------- ---------- -AGU--CAUA UGC------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------AAG AUAUCAUUAU AGGUUAGAAG U--------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------G CAGUG-AUUG ACA-UUAUU- GC-CUA---- ------CUUC 1141 U--------- -----UAG-- --GUAUA-G- CGAA--CG-A AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AG-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AUAGG G--GGACCA- C---UUUGUG -CCAGCAUCC GC-GGUCA-U ACAA-GG--- 1741 -CCC-UAG-- AGCAAAUAUU ---------- UUAG--GUGA -AC-AGAG-- ---------- 1801 -----GAGCU UUGGGACAAG UUAUUU---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UAGA--UCAA --UAA--GG- -GUGAAA--- 2281 U--------- --UUGCAU-U U-A------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 -UUCUCCAUU UGUUUGAAUA AAGCA----- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- -CUC---U-- -UUAGAUGGC 2641 C-AAACAAC- UAGGAUUAGA UAC--CC-UA -UUAG-U-UC AUUUCUA--- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 --------AU ---------- ---------- ---------U AACCUGGG-- -------UAG 3061 U--AUUAU-U UA--AA--CC UAAAGAAU-U UGG------C GGUU-UCUAA ---AC-UUA- 3121 --CUAGAG-G AACCUGCCCC AUA-A-ACG- ACA-AUCCA- --CGAG---- ------ACAA 3181 CCGA--CCCG UUCUUGUAAA AC-------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCU-UA 3601 UAUA-CC-GU -C----G-UU -UA------- GGGG--AU-U AA---AUA-- -AAU-----A 3661 A--------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -CU-GCUC-U UAAU-UGC-- ---------- ---------- ---------- 3781 ---------- ----UUAG-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------GCU -----AAUA- ----A-AU-- C-A----GAU CAAGGU-GUA GCU------- 4441 ---------U AUGU-CCGGG ---AGA---- ---------- ---------- -----GGGUG 4501 GGUUA-CAAU --A------- ---------- ---------- ---------- ---------- 4561 ---------- -AGAAC---- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---U------ ---------U AAA-CGGAA- -CUU--UC-- 4681 ---------- ---------- -AU-----UU UAUC--AU-- ---------- ---------- 4741 ------G-G- -AGA-A-G-- AAG-GUGGA- UUU-AGA-AG UA-AG-GU-- ----CUA--- 4801 ---UCA---- ---ACCU-GA AG-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -GAGGCUC-U GA--GAAA-U GUACACAUAC 4921 GCCC-GUC-G CUCU-CUU-- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- -------GUC 5101 CG-------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- --AAGAGAU- AAG-UCGUA- AC-AAAG--- 5281 -U-AGG--UA U--ACCGGAA GGU-G-UAUC UUGAAAGA.. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Daph.pul_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Daphnia pulex (water flea) -- mitochondrion. REFERENCE 1 AUTHORS Van Raay,T.J. and Crease,T.J. TITLE Partial mitochondrial DNA sequence of the crustacean Daphnia pulex JOURNAL Curr. Genet., 25, 66-72 (1994) COMMENT Corresponding GenBank entry: Z15015|g12913 (bases 161 to 911) complement common_name= water flea BASE COUNT 258 a 97 c 151 g 245 u 4691 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .UUAGGGAAA GUUUGA-AUC UGGCUU-UGG -C-UCUAUU- UUGAG-U-UA A--------- 181 ---------- ---------- ---------- ---------- -AUC--UAUA UAU------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------AAA CAGGGGAUUU AAAUAAAACA AUAA------ 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------G UAGUA-GUAA GUU-UUAGGA AA-CAA---- ------AUAU 1141 ---------- -----UUGG- --GCCUA-G- UUAA--AC-U CA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- -------U-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGAAU U--GACUAA- A---AUCGUG -CCAGCCGUC GC-GGUUA-G ACGA-AG--- 1741 -AAU-UUU-- AGUAGAGUAA ----AA---- GUUUU-GUUU -A-GUUA--- --------AC 1801 AUUCGAUCUC GUAAAAGAUG GUGAAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUUU--GUUG --AUA--AG- -GUGAAA--- 2281 UU---UU--- --UAAU-U-U A-A------- GGGAAAUUCU UAAGAAAUCU GUUGAGACC- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- --UA---A-- -AAAAUUUAG 2641 GUAAAAAAC- CAGGAUUAGA UAC--CC-UG -UUAUUC-UA AAU------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ----AAUAGU G--------- ---------- -----UA-AA UA---GGG-- UAGUAA-AAG 3061 U---UGU-UC UUCAAA--CC CAAAGAUU-U UGG------C GGCA-UCUUA ---UC-CU-- 3121 -AAUAGAG-G AGCUUGUCC- AUA-A-UUG- AUA-GUCCC- --CAUU---- ------UUAU 3181 CUUA--CCCU UUUUUGUUA- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGC--UG 3601 UAUA-CC-GC -C----GUUG -UCAG-UUAC ---------U UU--AAAA-- -GAA-----C 3661 GUUUUCAGGA AAAAUAUUUU UC-------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ------UUA- ----C-UU-- C-A----GGU CAAGGU-GCA GUU------- 4441 ---------U AUAA-AAGGG ---CAG---- ---------- ---------- -----UGAUG 4501 AGCUA-CAAU --UUU----- ---------- ---------- ---------- ---------- 4561 ---------- -AAUAG---- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -AAA------ ---------- -UA-CGGAU- -UUU--AG-- 4681 ---------- ---------- ----CU--UA AAAC------ ---------- ---------- 4741 ------U-C- -AGG-U-G-- AAG-GUGGA- UUU-AUU-AG UA-AA-UUUA CU-UAAG--- 4801 ---UAC--AG U-AAGUU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AAGGCAA-U AG--GAUG-U GCACAUAUC- 4921 GCCC-GUC-A CUCUCUUCUC ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- --------AA 5101 A--------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- GAGGAAGAU- AAG-UCGUA- AC-AAGG--- 5281 -U-AGA--UG U--ACUGGAA AGU-G-CAUC UAGAAUGA.. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Apis_mel_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Apis mellifera subsp. ligustica (western honey bee) -- mitochondrion. REFERENCE 1 AUTHORS Crozier,R.H. and Crozier,Y.C. TITLE The mitochondrial genome of the honeybee Apis mellifera: Complete sequence and genome organization JOURNAL Genetics 133, 97-117 (1993) COMMENT Corresponding GenBank entry: L06178|g336279 legacy_attribute= L06178 complement(14732..15517) biol_source= worker bees from single hive common_name= western honey bee BASE COUNT 329 a 46 c 100 g 311 u 4656 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......AUU -A-UAAAUU- UAUUA-AAU- A--------- 181 ---------- ---------- ---------- ---------- -AAU--CAUG UUG------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------UAG UUUUUUAGAU UAAUUGUAUU AAUUGAUUUA 721 UAUAUAAAAU AUAAAAAUUA UUAAAAAU-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- UAUAG-UAAA 1081 --UUAU---- -----AGU-U AAUAG-AGAA UUC-UGAAAC AA-UGAAU-- ------GAAA 1141 ---------- ---GUUUU-- --AUUCG-G- A-AA--UU-A AU-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------UCU- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGUAA G--GAUAAA- UA--UGAGUC GCCAGCAAUA GC-GGUUA-A ACUU-GA--- 1741 -CUU-AUA-- AAUUAAUUUU ----UU---- CUAAU-AUUA -A-UUUAAAU UGUAA----- 1801 ---------- ---------- UAAAAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ------U-U- A-UAAUUA-- 2161 -----AAUU- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UAUU--GAUU ---UU--AG- -GUGAAA--- 2281 UU---UUG-- --AAUU-A-A U-A-A----- UAA------- ---------- ---------- 2341 ---------- ---------- ---------- --UAAUUAU- -AA------- ---------- 2401 -AUAAUUUUU U--------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------U- UG---UCA-- -UUA---A-- -AAAAUUUAA 2641 U-AAAAAAC- UAGGAUUAGA UAC--CC-UA -CUAUA--AA AAUAGUAAAU AA-------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 --------AU A--------- ---------- -----UA-UU A----AGG-- UAGUA--AAU 3061 G-UUGAAUCA UUAAAA---U UAAACGAU-A UGG------C GGCU-UUUUA --UAU-CUA- 3121 -GUUAGAG-A UGUUUGUCGA UUAAU-UUG- AUA-GUCCA- --CGAU---- ------AAGA 3181 UCUA--CUUA AGUUUAAAUU U--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AUGU-AU 3601 UGUU-GU-UU -U----AAUU -AGC------ UUGA--AU-- UU--AUUU-- -GG------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-UAGA-G AAAU-UUU-- ---------- ---------- ---------- 3781 ---------- ----AUAU-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------AAU ------AAU- ----A-AU-- U-C----AAA -UCAAA-AUG UAG------- 4441 ---------U AUAU-UUAAG -AUAUA---- ---------- ---------- -----AGAUG 4501 AAUAU-CAAU --AAA----- ---------- ---------- ---------- ---------- 4561 ---------- -UUUAA---- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -UUU------ --------UA GAA-UUAUU- -UAU--UU-- 4681 ---------- ---------- --------UA AUAU------ ---------- ---------- 4741 ------A-A- -AUA-U-G-- AAA-GAGAA- UUU-AAA-AG UA-AA-UUAA A--GUAA--- 4801 ---UUUC--U U-UAAUU-GA AG-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AUAGUAU-U AA--AAAG-U GUACAAAUC- 4921 GCCC-GUC-A AUUU-CAUU- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- --------AA 5101 A--------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- -AUUGGAAU- AAG-UCGUA- AC-AUAG--- 5281 -U-AAG--AG U--ACCGGAA GGU-G-UUUU UAGAUU.... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Albn.coe_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Albinaria coerulea (land snail) -- mitochondrion. REFERENCE 1 AUTHORS Hatzoglou,E., Rodakis,G.C. and Lecanidou,R. TITLE Complete sequence and gene organization of the mitochondrial genome of the land snail Albinaria coerulea JOURNAL Genetics 140, 1353-1366 (1995) COMMENT Corresponding GenBank entry: X83390|g975668 (bases 6270 to 7028) complement common_name= land snail BASE COUNT 295 a 98 c 117 g 249 u 4683 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......CCC ACUUUA-AUU UGAUGGAUAU CG-UAAGC-- AAUAA-A-UA U--------- 181 ---------- ---------- ---------- ---------- GGUUA-AAUA UGG------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------AUC CUGAAGUGUA GCAUUCU--- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------C CAGUU-UAAG AUU-UUAAA- UUAUAUAA-- ------GAAA 1141 ---------- ---UUAUA-- --AUUUA-G- ACAG--UU-U AU-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- -------U-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AAUUU A--GGUUUA- U---UAGGUG -CCAGCAACC GC-GGUCA-A ACCU-AA--- 1741 -UAA-GUU-- AGCUUACAAG ----UUU--- AUUAA-AUUA .......... ..CUU----- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --AUAAUU-- 2161 CUUUA-AAG- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UAAU--AUAA --UAA-AUG- -GUGAAA--- 2281 UAU--UA--- --UUAU-G-A A-U-AU-U-- ---------- ---------- ---------- 2341 ---------- ---------- ---------- --AAUUCU-- ---------- ---------- 2401 -CAA------ ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------A- AG--UAUG-- GCUAUAAC-- -AAAUUCAUA 2641 G-AUAAAAC- UAGGAUUAGA GAC--CC-UA -CUAU-U-AU GACCCCAA-- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ----CUAAGU AA-------- ---------- -----UU-UA AU---AAG-- GAUUAA-AAU 3061 U--AUAUUAA UUCAAA--CU UAAAAAUU-A UGG------C GGCU-AAAUA ---AA-UCA- 3121 -UUUAGGG-G AACUUACCAU AUA-A-UUG- AUA-ACCAC- --CAAG---- ------CAUU 3181 AUUAUACUUA CUUUUUAAAA ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AAUU-UG 3601 UAUA-CC-GU -U----GUCU -UCAU----- GAAC--CCC- ---------- ---------U 3661 ACAAA----- ---------- ---------- ---------- ---------- ---------- 3721 ---------- GGG-GUUC-A UGAA-UAUU- ---------- ---------- ---------- 3781 ---------- ----AAUCA- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ------AAUA ------UUA- ----A-GA-- C-A----AAU CAAGGU-GCA GUC------- 4441 ---------U AUUG-GUAAG --AAUUA--- ---------- ---------- -----AGGUG 4501 AGUUA-CAUU --AA------ ---------- ---------- ---------- ---------- 4561 ---------- -UUAAU---- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --UU------ ---------- AUU-CGGAC- -UAC--GA-- 4681 ---------- ---------- -A---A--UG AAAA---A-- ---------- ---------- 4741 ------U-U- -GUA-U-A-- AAG-AUGGA- CUU-AAA-AG UA-AU-AUAU A--AGGA--- 4801 ---UAAU--U AAAAUAU-GA AC-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- --AUGUUU-U AU--UUGG-U GUACAAAUC- 4921 GCCC-GUC-A CUCU-CGCU- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- -------GAA 5101 AA-------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- -GG-GAGAU- AAG-UCGUA- AC-AAAG--- 5281 -U-AGG--GG U--AGUGGAA GCU-G-CCCC UAAUAAUAUA CUUACACCAU GUAGUAGUA. 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Dros.me3_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Drosophila melanogaster (fruit fly) -- mitochondrion. REFERENCE 1 AUTHORS Garesse,R. TITLE Drosophila melanogaster mitochondrial DNA: gene organization and evolutionary considerations JOURNAL Genetics 118 (4), 649-663 (1988) REFERENCE 2 AUTHORS Clary,D.O., Goddard,J.M., Martin,S.C., Fauron,C.M. and Wolstenholme,D.R. TITLE Drosophila mitochondrial DNA: a novel gene order JOURNAL Nucleic Acids Res. 10 (21), 6619-6637 (1982) REFERENCE 3 AUTHORS de Bruijn,M.H. TITLE Drosophila melanogaster mitochondrial DNA, a novel organization and genetic code JOURNAL Nature 304 (5923), 234-241 (1983) REFERENCE 4 AUTHORS Lewis,D.L., Farr,C.L. and Kaguni,L.S. TITLE Drosophila melanogaster mitochondrial DNA: Completion of the nucleotide sequence and evolutionary comparisons JOURNAL Insect Mol. Biol. 4 (4), 263-278 (1995) COMMENT Corresponding GenBank entry: U37541|g1166529 (bases 14131 to 14916) complement common_name= fruit fly BASE COUNT 321 a 57 c 99 g 309 u 4656 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....UUAAA GUUUUA-UUU UGGCUUAAAA -A-UUUGUU- AUUAA-U-UU G--------- 181 ---------- ---------- ---------- ---------- -AUU--UAUA UGU------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------AAA UUUUUGUGUG AUUUUAUAUU UAUU-UAAAA 721 AAUAAAUAUG ----AAA--- AUU-UAUUC- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------G CAGUA-AUUA AUA-UUAUU- AA-UUAAA-- ------GAAA 1141 ---------- ---UUUAG-- --AAAUA-G- CAAU--AU-A AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AA-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGUAU U--GACUAA- A---UUGGUG -CCAGCAGUC GC-GGUUA-U ACCA-UU--- 1741 -AAU-ACA-- AAUAAAUUUU -----U---- UUAGU-AUUA -A--UUAA-- ---------- 1801 -AUUAAAUUU AUUAAUAAUA AUAAAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUAA--AUAU --AUU--AA- -GUGAAA--- 2281 UU---UU--- --AUAU-U-U A-A------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 -AUUAUUAUA UAAAAAUGUA AUUGAGGU-- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- -UAA---A-- -AAAUUUUAA 2641 U-AAAAAAC- UAGGAUUAGA UAC--CC-UA -UUAU-U-UA AAAUGUAA-- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 --------AU AAA------- ---------- -----UU-GC UA---AAG-- UAGUAA-UAG 3061 U--UAUGUUC UUGAAA--CU UAAAAAAU-U UGG------C GGUA-UUUUA ---GU-CUA- 3121 -UCUAGAG-G AACCUGUUUU UUA-A-UCG- AUA-AUCCA- --CGAU---- ------GGAC 3181 CUUA--CUUA AAUUUGUAAU C--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGUU-UA 3601 UAUA-CC-GU -C----GUUA -UCA------ GAAU--AU-U UU--AUAA-- -GAA-----U 3661 AAUA------ ---------- ---------- ---------- ---------- ---------- 3721 ---------- -AU-AUUC-A AUAA-UUUU- ---------- ---------- ---------- 3781 ---------- ----AAUA-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ------AAAA -----UUUA- ----U-AU-- C-A----GAU CAAGGU-GUA GCU------- 4441 ---------U AUAU-UUAAG ---UAA---- ---------- ---------- -----UAAUG 4501 GGUUA-CAAU --AA------ ---------- ---------- ---------- ---------- 4561 ---------- -AUUUA---- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --UU------ ---------U AUA-UGAAU- -AAA--AU-- 4681 ---------- ---------- -U---A--UG AAAA---A-- ---------- ---------- 4741 ------A-U- -UUU-U-G-- AAA-GUGGA- UUU-AGU-AG UA-AA-AUUA U--AAAG--- 4801 ---AUUA--A U-AAUUU-GA UU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UUAGCUC-U AA--AAUA-U GUACACAUC- 4921 GCCC-GUC-G CUCU-UAUU- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- -------AUU 5101 AA-------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- -GGUAAGAU- AAG-UCGUA- AC-AUAG--- 5281 -U-AGA--UG U--ACUGGAA AGU-G-UAUC UAGAAUGA.. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Dros.yak_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Drosophila yakuba str. 2317.6 Ivory Coast (fruit fly) -- mitochondrion. REFERENCE 1 AUTHORS Clary,D.O. and Wolstenholme,D.R. TITLE The ribosomal RNA genes of Drosophila mitochondrial DNA JOURNAL Nucleic Acids Res. 13, 4029-4044 (1985) REFERENCE 2 AUTHORS Clary,D.O., Goddard,J.M., Martin,S.C., Fauron,C.M.R. and Wolstenholme,D.R. TITLE Drosophila mitochondrial DNA: A novel gene order JOURNAL Nucleic Acids Res. 10, 6619-6637 (1982) REFERENCE 3 AUTHORS Clary,D.O. and Wolstenholme,D.R. TITLE The mitochondrial DNA molecule of Drosophila yakuba: nucleotide sequence, gene organization, and genetic code JOURNAL J. Mol. Evol. 22, 252-271 (1985) COMMENT Corresponding GenBank entry: X03240|g12923 (bases 14154 to 14942) complement common_name= fruit fly isolate_name= 2317.6 Ivory Coast BASE COUNT 319 a 60 c 103 g 307 u 4653 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....UUAAA GUUUUA-UUU UGGCUUAAAA -A-UUUGUU- AUUAG-U-UU G--------- 181 ---------- ---------- ---------- ---------- -AUU--UAUA UGU------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------AAA UUUUUGUGUG AAUUUAUAUU UAUU-UAAAA 721 AAUAAAUAUA UUAUAAA-UU AUU-UAUUC- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------G CAGUA-AUUA AUA-UUAUU- AA-UUAAA-- ------GAAA 1141 ---------- ---UUUAG-- --AAAUA-G- CAAU--AU-U AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AA-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGUAU U--GACCAA- A---UUGGUG -CCAGCAGUC GC-GGUUA-U ACCA-AU--- 1741 -AAU-ACA-- AAUAAAUUUU -----U---- UUAGU-AUGA -A--UUAA-- ---------- 1801 ----AUUGAU UUAUUUAAAA AUAAAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUAA--AUAU --AUU--AA- -GUGAAA--- 2281 UU---UU--- --AUAU-U-U A-A------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 -AUUAUUUUA UAAAAUAAUA AUUGAAGU-- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- -UAA---A-- -AAAUUUUAA 2641 U-AAAAAAC- UAGGAUUAGA UAC--CC-UA -UUAU-U-UA AAAUGUAA-- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 --------AU AAA------- ---------- -----UU-GC UA---AAG-- UAGUAA-UAG 3061 U--UAUGUUC UUGAAA--CU UAAAAAAU-U UGG------C GGUA-UUUUA ---GU-CUA- 3121 -UCCAGAG-G AACCUGUUUU GUA-A-UCG- AUA-AUCCA- --CGAU---- ------GGAC 3181 CUUA--CUUA AAUUUGUAAU C--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGUU-UA 3601 UAUA-CC-GU -C----GUUA -UCA------ GAAU--AU-U UU--AUAA-- -GAA-----U 3661 AAUA------ ---------- ---------- ---------- ---------- ---------- 3721 ---------- -AU-AUUC-A AUAA-UUUU- ---------- ---------- ---------- 3781 ---------- ----AAUA-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ------AAAA -----UUUA- ----U-AU-- C-A----GAU CAAGGU-GUA GCU------- 4441 ---------U AUAU-UUAAG ---UAA---- ---------- ---------- -----UAAUG 4501 GGUUA-CAAU --AA------ ---------- ---------- ---------- ---------- 4561 ---------- -AUUUA---- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --UU------ ---------U AAA-CGGAU- -AAA--AU-- 4681 ---------- ---------- -U---A--UG AAAA---A-- ---------- ---------- 4741 ------A-U- -UUU-U-G-- AAG-GUGGA- UUU-GGU-AG UA-AA-AUUA U--AAAG--- 4801 ---AUUA--A U-AAUUU-GA UU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UUAGCUC-U AA--AAUA-U GUACACAUC- 4921 GCCC-GUC-G CUCU-UAUU- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- -------AUU 5101 AA-------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- -GGUAAGAU- AAG-UCGUA- AC-AUAG--- 5281 -U-AGA--UG U--ACUGGAA AGU-G-UAUC UAGAAUGA.. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Anph.gam_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Anopheles gambiae str. G3 (mosquito) -- mitochondrion. REFERENCE 1 AUTHORS Beard,C.B., Hamm,D.M. and Collins,F.H. TITLE The mitochondrial genome of the mosquito Anopheles gambiae: DNA sequence, genome organization, and comparisons with mitochondrial sequences of other insects JOURNAL Insect Mol. Biol. 2, 103-124 (1993) COMMENT Corresponding GenBank entry: L20934|g309056 (bases 14045 to 14844) complement common_name= mosquito isolate_name= G3 BASE COUNT 302 a 60 c 103 g 335 u 4642 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .AAUAAGAUU AUUUUA-UUC UAGUUAAAUA -U-UUUAUU- AUUAU-U-UU A--------- 181 ---------- ---------- ---------- ---------- -UUU--UACA UGU------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------AAA UUUUUGUGUG AAUUUUUAUU AAUUUUAAAA 721 AUUAAUAAUU UUUAAUUUAU UC-------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------G CAGUA-AUUA AUA-UUAAU- UA-UAAAA-- ------GAAA 1141 ---------- ---UUUUG-- --AAUUA-G- UAAU--AA-U AU-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AU-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGUAU U--GGUAAA- A---UUUGUG -CCAGCUACU GC-GGUUA-U ACAA-AU--- 1741 -GAU-GCA-- AAUAAAAAUU -----U---- UUAGU-AUUA -G--UUAA-- ---------- 1801 ----AUUGUU UAUAAUUAUU ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAAUUU-- 2161 -----AUAU- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- AUAA--AUUU --AUU--AG- -GUGAAA--- 2281 UU---UUU-- --AAAU-U-U A-U-UU-A-- UUAUUAAAAU GU-------- ---------- 2341 ---------- ---------- ---------- --AGAUUA-- ---------- ---------- 2401 -AUUUAAGC- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- -UAU---A-- -AAAAUUUUA 2641 U-AAUAAAC- UAGGAUUAGA UAC--CC-UA -UUAU-U-AA AAUUAAAUAU ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 --------AU AAGAA----- ---------- -----UA-CU U----AAG-- UAGUAU-UAG 3061 U--UAUAUUC UUAAAA--UU UAAAGAAU-U UGG------C GGUG-UUUUA ---GU-CUA- 3121 -UUUAGAG-G AAUCUGUUCU GUA-A-UUG- AUA-AUCCA- --CGUU---- ------GGAC 3181 CUCA--CUUA AUUUUGUUUU C--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AAUU-UG 3601 UAUA-UC-GC -C----GUCA -UCA------ GAAU--AU-A UU--AUAA-- -GAU-----U 3661 AAUA------ ---------- ---------- ---------- ---------- ---------- 3721 ---------- -AU-UUUC-U UGAU-AUUU- ---------- ---------- ---------- 3781 ---------- ----CAUU-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ------AAAU -----AAUA- ----U-GU-- C-A----GGU CAAGGU-GCA GUU------- 4441 ---------U AUGG-UUAAG ---UAG---- ---------- ---------- -----AAAUG 4501 GAUUA-CAAU --AA------ ---------- ---------- ---------- ---------- 4561 ---------- -AUAUA---- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --UU------ ---------U AUA-CGGAU- -AAU--UU-- 4681 ---------- ---------- -U---U--UG AAAUA--A-- ---------- ---------- 4741 ------A-A- -AUU-U-G-- AAG-GUGGA- UUU-AAU-AG UA-AU-AUAA A--AUAG--- 4801 ---AUUA--U U-UAUAU-GA UU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AUAGCUC-U AA--AACA-U GCACACAUC- 4921 GCCC-GUC-G CUCU-CAUUU ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- --------UU 5101 A--------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- AAAUGAGAU- AAG-UCGUA- AC-AUAG--- 5281 -U-AGA--UG U--ACUGGAA AGU-G-UAUC UAGAAUGA.. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Locu.mi2_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Locusta migratoria (migratory locust) -- mitochondrion. REFERENCE 1 AUTHORS Flook,P.K., Rowell,C.H.F. and Gellissen,G. TITLE The sequence, organization and evolution of the Locusta migratoria mitochondrial genome JOURNAL J. Mol. Evol. 41, 928-941 (1995) COMMENT Corresponding GenBank entry: X80245|g1182014 (bases 14021 to 14847) complement common_name= migratory locust BASE COUNT 251 a 76 c 123 g 377 u 4615 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... ...UAUAAUU 121 UGUUUAGAUU AUUUUU-UAU UGUAUGUGUU -U-CGUUUA- UAUUC-U-AA A--------- 181 ---------- ---------- ---------- ---------- -GUU--UUAU UCU------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------UGC UUAUUUAUUC ACUUUUUCUU UAUAUUAUAU 721 AUAAGUUUUG UUAGACUAAA UGUUCUAUUU AUUU------ ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------A UAGUA-AUUA AAU-UUAAU- UA-UCAAG-- ------UUAU 1141 ---------- ---UUUGG-- --AAUUA-G- UAAU--UG-A UG-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------A--- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGUAU U--GGCAUA- U---UUCGUG -CCAGCAGCC GC-GGUUA-U ACGA-UU--- 1741 -AAU-ACA-- AGUGAAUAUU -----U---- UUGGU-UGAU -G--UAG--- ---------- 1801 ---------- ---UUAUAAA UUAUUU---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UGAGUUU- 2161 ------UAAU ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- AAUU--AAUU --AUU--AG- -GUGAAA--- 2281 UU---UU--- ---AU----- --U-UU-A-- UUAUUGCU-- ---------- ---------- 2341 ---------- ---------- ---------- ----CUUA-- ---------- ---------- 2401 -AUUUGACC- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- -UAU---A-- --AAAUUAUA 2641 A-AAUAGAC- UAGGAUUAGA UAC--CC-UA -UUAU-U-UA AAUGUAAAUU ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 -------UUG UUU------- ---------- -----UA-CC U----GGG-- UAUUAU-UAG 3061 U--UAAGGUC UUUAAA--CC CAAAGAAU-U UGG------C GGUA-UUUCA ---UU-CCA- 3121 -UUCAGAG-G AACCUAUCUC AUG-A-UUG- AUA-GUACA- --CGAU---- ------UUAC 3181 UUUA--CUUA AUUUAUU--- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---UGUU-UG 3601 UAUA-UC-UC -C----GUUA -UCA------ GAAA--AU-C UU--UUUG-- -GAG-----A 3661 AAAA------ ---------- ---------- ---------- ---------- ---------- 3721 ---------- -AU-UUUC-U UGUU-UUUU- ---------- ---------- ---------- 3781 ---------- ----UAUU-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ------AAAA -----UUUA- ----U-UU-- C-A----GGU CAAGGU-GCA GCU------- 4441 ---------U AUAG-UUAAG --UGUA---- ---------- ---------- -----UGAUG 4501 GGUUA-CAAU --AA------ ---------- ---------- ---------- ---------- 4561 ---------- -UUUUUU--- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --UU------ ---------U AUU-AUGGA- -UUU--AA-- 4681 ---------- ---------- -UU--U--UG UAAU--AU-- ---------- ---------- 4741 ------U-U- -UAA-U-G-- AAG-GUGGA- UUU-GAU-AG UA-AU-UUAA A--UUAU--- 4801 ---UUAA--U U-UAACU-GA UA-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UUGGCUC-U GA--AGUG-U GUACACAUC- 4921 GCCC-GUC-A CUCU-CGUUA UU-------- -G-AU----- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ----UAAAAU 5101 UUUAU----- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---AUC---- --UUUU--AA U-AUGAGAU- AAG-UCGUA- AC-AUAG--- 5281 -U-AGA--UG U--ACUGGAA AGU-G-UAUC UAGUAAGUUU AUU....... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Cthp.pa1_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Chorthippus parallelus str. ESC (meadow grasshopper) -- mitochondrion. REFERENCE 1 AUTHORS Szymura,J.M., Lunt,D.H. and Hewitt,G.M. TITLE The sequence and structure of the meadow grasshopper (Chorthippus parallelus) mitochondrial srRNA, ND2, COII, ATPase8, and 9 TRNA genes JOURNAL Insect Mol. Biol. 5, 127-139 (1996) COMMENT Corresponding GenBank entry: X95574 (bases 14 to 807) complement common_name= meadow grasshopper isolate_name= ESC BASE COUNT 247 a 80 c 133 g 334 u 4648 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... ....U-A-GA A--------- 181 ---------- ---------- ---------- ---------- -GUU--UUAU UCU------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------UGC UUAUUUAUUC AUUUUUUUCU UUGUAUUAUA 721 UGCAAGUUUU UUUAGACUAA AAGUUCUUUU U--------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------G CAGUG-AUUU AAU-UUAAU- UA-UCAAG-- ------UGAU 1141 ---------- ---UUUGG-- --AAUUA-G- CAAU--UG-A UU-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------U--- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGUAU U--GGCAUA- U---UUCGUG -CCAGCAGCC GC-GGUUA-U ACGA-UU--- 1741 -AAU-GCA-- AGUGAAUAUA -----U---- UUGGU-UAAA -A--CAGU-- ---------- 1801 ---------- ---UAUUUUA UGAUUU---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAGGA--- 2161 -----UUAAU ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------U UAUA--AAUU --UUU-AAG- -GUGGAA--- 2281 UUU---U--- --AAUU-UUA U---UU-G-- UGAU------ ---------- ---------- 2341 ---------- ---------- ---------- ---UCUUA-- ---------- ---------- 2401 -UUAUGAUUC U--------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- -G-U---G-- -AAACUUAGA 2641 U-AAUAAAC- UAGGAUUAGA UAC--CC-UA -UUAU-U-UU AAGUGUUAAU ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ------CAUG UU-------- ---------- -----UA-CC A----GGG-- UAGUAU-UAG 3061 U--UAGGAUC UUAAAA--CU CAAAGAAU-U UGG------C GGUA-UUUCA ---UU-CCA- 3121 -UUUAGAG-G AACCUAUCCC GUA-A-UUG- AUA-AUACA- --CGAU---- ------UAAC 3181 UAUA--CUUA AUUUAUU--- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---UGUU-UG 3601 UAUA-UC-UC -C----GUUA -UCA------ GAAA--AU-C UU--UAUUG- -GAG-----U 3661 UAUA------ ---------- ---------- ---------- ---------- ---------- 3721 ---------- -AU-UUUC-U UGAU-UUAU- ---------- ---------- ---------- 3781 ---------- ----AAUU-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ------AUAA -----AAUA- ----U-UU-- C-A----GGU CAAGGU-GCA GCU------- 4441 ---------U AUA--UUAAG ---AGG---- ---------- ---------- -----AGGUG 4501 GGUUA-CAAU --AA------ ---------- ---------- ---------- ---------- 4561 ---------- -AUUUAG--- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --UU------ ---------- AUA-CGUAU- -UUA--AU-- 4681 ---------- ---------- -GG--U--GA AAGA--CU-- ---------- ---------- 4741 ------A-U- -UAA-U-A-- AAG-GUGGA- UUU-AAU-AG UA-AU-UUGA U--UUAU--- 4801 ---UUAA--U U-CAAUU-GA UU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UUGGCUC-U GA--GGUG-U GUACACAUC- 4921 GCCC-GUC-A CUCU-CAUUA UU-------- -G-AUU-AAU ---------- ---------- 4981 ----CUA--- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---UUUUAAU 5101 UUAAAGU--- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 -------UAG UU--UC---- --AGUU--UA -GAUGAGAU- AAG-UCGUA- AC-AUAG--- 5281 -U-AGA--UG U--ACUGGAA AGU-G-UAUC UAGAAAGUUU AC........ .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Ptrm.mar_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Petromyzon marinus (sea lamprey) -- mitochondrion. REFERENCE 1 AUTHORS Lee,W.-J. and Kocher,T.D. TITLE Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: early establishment of the vertebrate genome structure JOURNAL Genetics 139, 873-887 (1995) COMMENT Corresponding GenBank entry: U11880|g515484 (bases 1344 to 2243) geog_source= Cocheco R. at Dover, NH biol_source= adults common_name= sea lamprey BASE COUNT 301 a 234 c 168 g 197 u 4542 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....CAAAG GAUUAG-UUC CAGCCUUAAU -A-UCAACU- AUAUA-UGA- A--------- 181 ---------- ---------- ---------- ---------- AUUA--CACA UGC-AA-GU- 241 ---------- ---------- ---------- ---------- -UUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC--ACUC CCGUG--AGG AC---CUCCU ---------- 481 ------UUA- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --AC----U- 781 ---------- ---AUA---- ---------- ---A--ACA- ---------- ---------- 841 ---------- ---------- ---UAA---- AAA------- --AGA-GA-- UGGU-AUC-- 901 --A------- ---------- ---------- ---GGCUC-A C--------- ---------- 961 -AAAAA---- ---------- ---------G UCAGCC-CAC AA--CACCUA --G------- 1021 ----CCAC-- ---------C -CAC-A---- ---------- ---------- CCCUC-AAGG 1081 --GUAC---- -----UCA-G CAGUG-AUAA ACC-UUAAGC AA-UGGGC-- ------GCAA 1141 ---------- ---GCCCG-- --ACUAA-G- U-UA-CAU-A UU-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------UU-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGAGC U--GGUAAA- C---CUCGUG -CCAGCCACC GC-GGUUA-U ACGA-GG--- 1741 -AGC-UCA-- AGCUGAUAUC ---------U CCGGC-ACAA AG-CGUGAUU A--AA----- 1801 ------AUAU UUAGCUUAAU UAAUAC---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAUAGA-- 2161 ------AGC- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- CAUC--AUGC --CUG-CUA- -GUUAAA--- 2281 UAG--GUAU- --GCCU---A A-G-UA-U-- CCCA------ ---------- ---------- 2341 ---------- ------ACAU C-GAAA--GA A-UCUAUA-- ---------- ---------- 2401 -UUAAUAAGC UCACU----- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------U- U----GAUA- -UCA---C-- GAAAGCAAAA 2641 CUCACAAAC- CGGGAUUAGA UAC--CC-CG -CUAUGC--- ---CUGCCAU AAAUA----- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 -AACAACCGU ---------- ---------- -----CG-CC A----GGG-- CACUAC-GAA 3061 C--AAUC-GU UUAAAA--CC CAAAGAAC-U UGA------C GGCA-CCCUA --AAC-CCA- 3121 -CCUAGAG-G AGCCUGUCCU AUAAC-CCG- AUA-CUCCA- --CGUU---- ------UUAC 3181 CCAA--CCGC CUCUCGCCCC C--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGUC-UA 3601 UAUA-CC-GC -C----GUCG -CCA------ GCCA--AC-C UU--AUAA-- -AAG-----A 3661 AUAACC---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AGGC-A AAAA-AGU-- ---------- ---------- ---------- 3781 ---------- --CUAUCUAU ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------ACA -----AAUA- ----C-GU-- C-A----GGU CGAGGU-GCA ACC------- 4441 ---------U AUGA-GGCAG --GCAG---- ---------- ---------- -----AGAUG 4501 GGCUA-CACU --CUCU---- ---------- ---------- ---------- ---------- 4561 ---------- -ACCC----- ---------- ---------- ---------- ---------- 4621 ---------- ---------- AGAG------ ---------U AUA-CGAAU- -AAU--UU-- 4681 ---------- ---------- -AA--U--GA AAA------- ---------- ---------- 4741 ------A-A- -UUU-U-G-- AAG-GUGGA- UUU-AGC-AG UA-AA-CAAG A-AUAGU--- 4801 ---UUGU--C U-AGUU--GA AG-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UUGCCAC-U AG--GGUG-C GUACACACC- 4921 GCCC-GUC-A CUCU-CCCCC C---ACA-C- -----C-CG- ------GAGA AAA------- 4981 ---------- --GU------ --CGU----- ---A-----A C--------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- --------AU 5101 G--------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ------GU-- AA------GC G-U----AC- ---------- ---------- 5221 ---------- CGG---AAGG U--------G CGCUUGGAA- AA........ .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Rana_cat_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Rana catesbeiana (bull frog) -- mitochondrion. REFERENCE 1 AUTHORS Nagae,Y., Fujii,H., Yoneyama,Y., Goto,Y. and Okazaki,T. TITLE Nucleotide sequence of the Rana catesbeiana mitochondrial small (12S) and large (16S) ribosomal RNA genes JOURNAL Nucleic Acids Res. 16, 10363-10363 (1988) COMMENT Corresponding GenBank entry: X12841|g13450 (bases 71 to 1007) common_name= bull frog BASE COUNT 291 a 219 c 187 g 240 u 4505 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....CAAAG GUUUGG-UCC UAGCCUUAUU -A-UCAACU- GUUUC-UCA- A--------- 181 ---------- ---------- ---------- ---------- CUUA--CACA UGC-AA-GU- 241 ---------- ---------- ---------- ---------- -AUCA----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC--ACAC CCGUG--AGA AC---GCCCU -UU------- 481 -AA------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------AU 781 CU-------- ---UACCC-- ---------- AGAU------ ---------- ---------- 841 ---------- ---------- ---------- ---------A A-AGGAGC-- UGGU-AUC-- 901 --A------- ---------- ---------- ---GGC---- ---------- --------AC 961 AAACCCUCC- ---------- ---------- ---GCC-CAC AA--CACCUA --GU------ 1021 -----CUC-- --------AC -CAC------ ---------- ---------- ACCC--UCAA 1081 ---GGG---- --UAAUCA-G CAGUG-AUUA AUU-UUGCGU A--UGAGC-- ------GUCA 1141 ---------- ---GCUUG-- --ACUCA-G- U-UA-GAG-A AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AG-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGGC C--GGCUAA- C---CCGGUG -CCAGCCGCC GC-GGCUA-C ACCGUGG--- 1741 -GGC-UCG-- AGUUGAUAGU -----C---A UCGGC-GUUA AG-CGUGAUU A-AAG----- 1801 ---------- -----UUAUU ACAAAU---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAAGGU-- 2161 -----UAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- -UUA--AUA- --CUU-AGUA -GUUUUA--U 2281 GCU---UGU- ---UAU-U-A A---GA-AA- UCCAC----- ---------- ---------- 2341 ---------- ------AA-A C-GAAA--GU U-ACCCUA-- ---------- ---------- 2401 -AUUAUUAUG ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------C- UU---GAAU- -ACA---C-- GACAGCUAGG 2641 AAAACAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-CU AGCCGUAAA- -----CAA-- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------U 3001 UAAUUUACAC CAAU------ ---------- --AAGCG-CC A----GGG-- AAUUAC-GAG 3061 C---AAU-GC UUAAAA--CC CAAAGGAU-U UGA------C GGUG-UCCCA ---CC-CC-- 3121 -ACUAGAG-G AGCCUGUUCU AUA-A-UCG- AUG-AUCCC- --CGAU---- ------AUAC 3181 CCGA--CCAU UUCUCGCUUA UC-------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGUC-UG 3601 UAUA-CC-UC -C----GUCG -AAA------ GCUU--AC-C AU--GUGA-- -ACG-----C 3661 UUGCA----- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AGGC-U UAAU-GAC-- ---------- ---------- ---------- 3781 ---------- --CUAACAC- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------GUC -----AAUA- ----C-GU-- C-A----GGU CAAGGU-GCA GCU------- 4441 ---------U AAGA-AAUGG --GAAG---- ---------- ---------- -----UAAUG 4501 GGCUA-CAAU --UUCUA--- ---------- ---------- ---------- ---------- 4561 ---------- --AUC----- ---------- ---------- ---------- ---------- 4621 ---------- ---------U AGAA------ ---------C AAA-CGAAA- -GAC--UA-- 4681 ---------- ---------- -UA--U--GA AAU---UA-- ---------- ---------- 4741 ------U-A- -AUCAU-G-- AAG-GUGGA- UUU-AGU-AG UA-AA-AAGA A-AAUAG--- 4801 ---AGUG--U U-CUUUU-UA AC-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -CCGGCUC-U GG--GACG-C GUACACACC- 4921 GCCC-GUC-A CCCU-CUUCG AU--AGU--- ---------- ----AUCUCA CCCC------ 4981 ----GU---- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- -----UCCUA 5101 ACCC------ ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ------AC-- --------UA 5221 UUAC------ --------AU U-------UU AGAAGAGGC- AAG-UCGUA- AC-AUGG--- 5281 -U-AAG--UG U--ACUGGAA AGU-G-CACU UGGUUUAUA. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Xeno.lae_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Xenopus laevis (tongueless frog; African clawed frog) -- mitochondrion. REFERENCE 1 AUTHORS Roe,B.A., Ma,D.-P.P., Wilson,R.K. and Wong,J.F.-H. TITLE The complete nucleotide sequence of the Xenopus laevis mitochondrial genome JOURNAL J. Biol. Chem. 260, 9759-9774 (1985) REFERENCE 2 AUTHORS Wong,J.F.-H., Ma,D.-P.P., Wilson,R.K. and Roe,B.A. TITLE DNA sequence of the Xenopus laevis mitochondrial heavy and light strand replication origins and and flanking tRNA genes JOURNAL Nucleic Acids Res. 11, 4977-4995 (1983) COMMENT Corresponding GenBank entry: M10217 (bases 2205 to 3023) common_name= tongueless frog; African clawed frog BASE COUNT 266 a 209 c 163 g 181 u 4623 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... ...UAAAGGU UUGG------ UCCUA-GCCU 1081 --UGAA---- ----UUCA-G CAGUG-AUAA ACA-UUGAAC A--UGAGC-- ----GACACA 1141 AA-------- ---GCUCG-- --AUUCA-G- U-UA-CAGUA AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- -------U-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGAGU U--GGUCAA- U---CUCGUG --CAGCCGCC GC-GGUUA-U ACGA-GA--- 1741 -AAC-UCA-- AGUUGAUCAU -----U---U UCGGC-GUAA AC-GGUGAUU A-AAG----- 1801 ---------- ------UAAC CCAAAC---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAGAGU-- 2161 -----CAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- -CUC--CAAC ---CA-AGC- UGUCGCAC-- 2281 GCU---UUC- --GUUG-GUU U---GA-AG- AACAC----- ---------- ---------- 2341 ---------- ------UC-A C-GAAA--GU A-ACUCUA-- ---------- ---------- 2401 -CCCAUAUUA CA-------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------C- UU---GAAC- -UCA---C-- GACCGCUAGG 2641 A-AACAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-CU AGCCAUAAAC -----UUU-- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 GACUACUUAC GCAA------ ---------- --AAAU--CC GC---CAG-- AACUAC-GAG 3061 C--CUAA-GC UUAAAA--CC CAAAGGAC-U UGG------C GGUG-CUCCA --AAC-CCA- 3121 -CCUAGAG-G AGCCUGUUCU GUA-A-UCG- AUA-CCCCU- --CGCU---- ------AAAC 3181 CUCA--CCAC UUCUUGCCAA ACC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---CGCC-UA 3601 UAUA-CC-AC -C----GUCG -CCA------ GCCC--AC-C UC--GUGA-- -GAG-----A 3661 UUCUUA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AGGC-U UAAU-GAU-- ---------- ---------- ---------- 3781 ---------- ---UUUUC-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------AUC -----AACA- ----C-GU-- C-A----GGU CAAGGU-GUA GCA------- 4441 ---------U AUGA-AGUGG --GAAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --UUCUA--- ---------- ---------- ---------- ---------- 4561 ---------- -UACCU---- ---------- ---------- ---------- ---------- 4621 ---------- ---------U AGAA------ ---------U AAA-CGAAA- -GAU--CU-- 4681 ---------- ---------- -CU-AU--GA AAC---C--- ---------- ---------- 4741 ------A-G- -AUC-GAGAA AAG-GCGGA- UUU-AGC-AG UA-AA-GAGA A-ACAAG--- 4801 ---AGAG--U UCCUCUU-UA AA-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -ACGGCCC-U GG--AGCG-C GCACACACC- 4921 GCCC-GUC-A CCCU-CUUCU ACAAAA---- ---------- ----AUCAAC CAAC------ 4981 ----GU---- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- -------CUA 5101 UA-------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ------AA-- --------CA 5221 CACAA----- ---------U U-AACACA-A AGAAGAGGCC AAG-UCGUAG ACCACUGAGA 5281 UC-GGGAUCA CCAGCCGGAA GGU-G-UGCU UGGAAU.... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Amby.tig_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Ambystoma trigrinum (tiger salamander) -- mitochondrion. REFERENCE 1 AUTHORS Titus,T.A. and Larson,A. TITLE A molecular phylogenetic perspective on the evolutionary radiation of the salamander family Salamandridae JOURNAL Syst. Biol. 44, 125-151 (1995) COMMENT common_name= tiger salamander NB: 3' end indeterminable BASE COUNT 323 a 153 c 130 g 198 u 4638 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .....UUA-U ACGA-GA--- 1741 -AGC-CCAA- AUUAAUAA-A -----C---A ACGGC-UCAA AG-AGCGGUU A-AAU----- 1801 ---------- GGAAAUUUUU ACACAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAGUUU-- 2161 -----AAAAA ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- AUUA--ACUA ---A---GC- CGUUAUAC-- 2281 GCA----A-- --UAGU-U-A A-A-UC-UA- AAAUCAA--- ---------- ---------- 2341 ---------- ------CA-A C-GAAA--GU A-AUACUA-- ---------- ---------- 2401 -AUAAAUUAA AAU------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------A- UU---GAAG- -CCG---C-- -AAAGCUAUG 2641 A-CACAAAC- UGGGAUUACA UAC--CC-CA -CUAUGC-CU AGCCAUAAAC ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 -----UUUGA UCU------- ---------- --UUCCG-CC G----GAG-- UACUAC-GAG 3061 C--AAUA-GC UUAAAA--CU CAAAGGAC-U UGG------C GGUG-CUCUA --CAC-CCA- 3121 -CCUAGAG-G AGCCUGUUCU AUA-A-UUG- AUA-AUCCC- --AAAU---- ------AAAC 3181 CUCA--CCAC CCAUUGCAAA AC-------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCC-UA 3601 UAUA-CC-GC -C----GCCG -UCA------ GCUU--AC-C CU--UUAA-- -GGG-----A 3661 GAACAA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AAGC-U AAAU-GAU-- ---------- ---------- ---------- 3781 ---------- ----AAAC-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------AUA -----AAAA- ----C-GU-- C-A----GGU CAAGGU-GUA GCA------- 4441 ---------C AUAG-GGUGG --GAAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --UUCU---- ---------- ---------- ---------- ---------- 4561 ---------- -UUUA----- ---------- ---------- ---------- ---------- 4621 ---------- ---------- AGAA------ ---------A AAA-CAAAA- -AAC--CA-- 4681 ---------- ---------- -AA--U--GA AAA----A-- ---------- ---------- 4741 ------A-A- -GUU-G-G-- AAG-GAGGA- UUU-GCU-AG UA-AA-AAGA A-AUAAG--- 4801 ---AGUG--U U-CUUUU-UA AA-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- UUUGGCUA-U AG--AGCG-C GCACACACC- 4921 GCCC-GUC-A CCCU-CUUCA A---CAC--- ---------- ----UAUAUU UUA------- 4981 ----AGU--- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- --------AA 5101 UUA------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- -----ACU-- ---------A 5221 ACC------- --------UA AUAAAACA-A AGAAGAGGA- AAG-UCGUA- AC-AUGG--- 5281 -U-AAG--UU U--ACCGGAA GGU-G-AACU UGGAUUCAAC UUGUAGCUUA AUUAAAGCAU 5341 CUUACUUACA CUAAGAAAAU ACUUGAUAAA ACCUAGUCGA GUUGAGUAAA AAUUAUAGCC 5401 UAAUUAUUUA ACACCUAAAA AUACUAAAAC UAAAACAAAU .. // LOCUS Onrh.myk_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Oncorhynchus mykiss (rainbow trout) -- mitochondrion. REFERENCE 1 AUTHORS Zardoya,R., Bautista,J.M. and Garrido-Pertierra,A. TITLE The complete nucleotide sequence of the mitochondrial DNA of the Rainbow trout, Oncorhynchus mykiss JOURNAL Unpublished (1994) COMMENT Corresponding GenBank entry: L29771|g463153 (bases 2088 to 3767) common_name= rainbow trout BASE COUNT 285 a 259 c 215 g 185 u 4498 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....CAAAG GCUUGG-UCC UGACUUUACU -A-UCAGCU- CUAAC-UGA- A--------- 181 ---------- ---------- ---------- ---------- CUUA--CACA UGC-AA-GU- 241 ---------- ---------- ---------- ---------- -CUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC--AUUC CUGUG--AGG AU---GCCCU -U-------- 481 -AA------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------UC 781 CCU------- ---GCCC--- ---------G GGGA------ ---------- ---------- 841 ---------- ---------- ---------- --C------- G-AGGAGC-- CGGC-AUC-- 901 --A------- ---------- ---------- ---GGCAC-G C--------- ---------- 961 --CCAG---- ---------- ---------G -CAGCC-CAC GA--CGCCUU --GC------ 1021 -----UAA-- --------GC -CAC------ ---------- ---------- ACCCC-CAAG 1081 --GAAA---- ----CUCA-G CAGUG-AUAA AUA-UUAAGC CA-UAAGC-- ------GAAA 1141 ---------- ---GCUUG-- --ACUUA-G- U-UA-AGG-U UA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AG-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGGC C--GGUAAA- A---CUCGUG -CCAGCCACC GC-GGUUA-U ACGA-GA--- 1741 -GAC-CCU-- AGUUGAUAA- ---CUAC--- -CGGC-GUAA AG-AGUGGUU A-UGG----- 1801 ---------- -----AAAAU AUUUA----- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- A-UAAAGC-- 2161 -----CGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- CACC--CCC- --UCA-GC-- CGUCAUAC-- 2281 -GC--ACCU- ---GGG-A-G C-A-CG-AA- GACCU----- ---------- ---------- 2341 ---------- ------ACUG C-GAAA--GC A-GCGUUU-- ---------- ---------- 2401 -AACUAUG-- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------C- CU---GACC- -CCA---C-- GACAGCUAAG 2641 A-AACAAAC- UGGGAUUAGA UAC--CC--A -CUAUGC-CU AGCCGUAAAC CUU--GAU-- 2701 ---AG-AA-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ----AUAUAC AAU------- --------UG AUAUCCG-CC A----GGG-- AACUAC-AAG 3061 C--GCCA-GC UUAAAA--CC CAAAGGAC-U UGG------C GGUG-CCUCA --GAC-CCA- 3121 -CCUAGAG-G AGCCUGUUCU AGA-A-CCG- AUA-ACCCC- --CGUU---- ------CAAC 3181 CUCA--CCAC CCCUUGUUUU ACC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---CGCC-UA 3601 UAUA-CC-AC -C----GUCG -UCA------ GCUU--AC-C CU--GUGA-- -AGG-----C 3661 CCCAUA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU--AGC-A AAAU-GGG-- ---------- ---------- ---------- 3781 ---------- ---CAAAA-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 --------CC -----AAAA- ----C-GU-- C-A----GGU CGAGGU-GUA GCG------- 4441 ---------C AUGA-GGUGG --GAAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --CUCUA--- ---------- ---------- ---------- ---------- 4561 ---------- --AAU----- ---------- ---------- ---------- ---------- 4621 ---------- ---------U AGAG------ --------CA CUA-CGAAC- -CAC--GC-- 4681 ---------- ---------- -UG--U--GA AAU---CA-- ---------- ---------- 4741 ------G-C- -GUC-C-G-- AAG-GUGAAA UUU-AGC-AG UA-AA-CAGA A-AACAG--- 4801 ---AGAG--U U-CUCUU-GA AA-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -CUGGCUC-U GA--GGCG-C GCACACACC- 4921 GCCC-GUC-A CUCU-CCCCA ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------A GUUCAACCUG -UCCUUCUAA 5101 CUAAGAAGUU AACCGAACAA ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- AGGGGAGGC- AAG-UCGUA- AC-AUGG--- 5281 -U-AAG--UG U--ACCGGAA GGU-G-CGCU UGGAAUAAC. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Salm.sa2_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Salmo salar (Atlantic salmon) -- mitochondrion. REFERENCE 1 AUTHORS Hurst,C.D., Bartlett,S.E. and Davidson,W.S. TITLE Mitochondrial DNA sequence of Atlantic salmon (Salmo salar) JOURNAL Unpublished (1996) COMMENT Corresponding GenBank entry: U12143 (bases 69 to 1016) common_name= Atlantic salmon BASE COUNT 290 a 257 c 211 g 188 u 4496 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....CAAAG GCUUGG-UCC UGACUUUACU -A-UCAGCU- CUAAC-UGA- A--------- 181 ---------- ---------- ---------- ---------- CUUA--CACA UGC-AA-GU- 241 ---------- ---------- ---------- ---------- -CUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC--AUUC CUGUG--AGG AU---GCCCU -U-------- 481 -AA------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------UC 781 CC-------- ---UGCC--- ---------- GGGA------ ---------- ---------- 841 ---------- ---------- ---------- --C------- G-AGGAGC-- CGGC-AUC-- 901 --A------- ---------- ---------- ---GGCAC-G C--------- ---------- 961 --CCAA---- ---------- ---------G -CAGCC-CAA GA--CGCCUU --GC------ 1021 -----UAA-- --------GC -CAC------ ---------- ---------- ACCCC-CAAG 1081 --GAAA---- ----CCCA-G CAGUG-AUAA AUA-UUAAGC CA-UAAGC-- ------GAAA 1141 ---------- ---GCUUG-- --ACUUA-G- U-UA-AAG-U UA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AG-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGGC C--GGUAAA- A---CUCGUG -CCAGCCACC GC-GGUUA-U ACGA-GA--- 1741 -GGC-CCU-- AGUUGAUAA- ---CUAC--- -CGGC-GUAA AG-AGUGGUU A-CGG----- 1801 ---------- ----AAAAAU AUUUA----- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- A-UAAAGC-- 2161 -----CGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- CACC--CCC- --UCA-GC-- CGUCAUAC-- 2281 -GC--ACCU- ---GGG-G-G C-A-CG-AA- GAUCU----- ---------- ---------- 2341 ---------- ------ACUA C-GAAA--GC A-GCUUUA-- ---------- ---------- 2401 -AUUAUA--- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------C- CU---GAAC- -CCA---C-- GACAGCUACG 2641 A-CACAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-CU AGCCGUAAAC UUU--GAU-- 2701 ---GG-AA-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ----ACAUAC AAC------- --------UG ACAUCCG-CC A----GGG-- GACUAU-AAG 3061 C--GCCA-GC UUAAAA--CC CAAAGGAC-U UGG------C GGUG-CCUCA --GAC-CCA- 3121 -CCUAGAG-G AGCCUGUUCU AGA-A-CCG- AUA-ACCCC- --CGUU---- ------CAAC 3181 CUCA--CCAC CUCUUGUUUU CCC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---CGCC-UA 3601 UAUA-CC-AC -C----GUCG -UCA------ GCUU--AC-C CU--GUGA-- -AGG-----C 3661 CUUAUA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AAGC-A AAAU-GGG-- ---------- ---------- ---------- 3781 ---------- ---CAAAA-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------CCC -----AAAA- ----C-GU-- C-A----GUC GGAGGU-GUA GCG------- 4441 ---------C AUGG-GGUGG --GAAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --CUCUA--- ---------- ---------- ---------- ---------- 4561 ---------- --AAU----- ---------- ---------- ---------- ---------- 4621 ---------- ---------U AGAG------ --------CA CUA-CGAAC- -CAC--GC-- 4681 ---------- ---------- -UG--U--GA AAC---CA-- ---------- ---------- 4741 ------G-C- -GUC-C-A-- AAG-GUGGA- UUU-AGC-AG UA-AA-UAGA A-AAUAG--- 4801 ---AGAG--U U-CUCUU-GA AA-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -CUGGCUC-U GA--GGCG-C GCACACACC- 4921 GCCC-GUC-A CUCU-CCCCA ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------A GUUCAAUUAA -CCCUUCUAA 5101 CUAAGAAAUU AACCGAACAA ANNA------ ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- AGGGGAGGC- AAG-UCGUA- AC-AUGG--- 5281 -U-AAG--UG U--ACCGGAA GGU-G-CACU UGGAAUAAC. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Crss.lac_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Crossostoma lacustre (freshwater loach(=fish)) -- mitochondrion. REFERENCE 1 AUTHORS Tzeng,C.-S., Hui,C.-F., Shen,S.-C. and Huang,P.-C. TITLE The complete nucleotide sequence of the Crossostoma lacustre mitochondrial genome: Conservation and variations among vertebrates JOURNAL Nucleic Acids Res. 20, 4853-4858 (1992) REFERENCE 2 AUTHORS Tzeng,C.-S., Shen,S.-C. and Huang,P.-C. TITLE Mitochondrial DNA identity of Crossostoma (Homalopteridae, Pisces) from two river systems of the same geographical origin JOURNAL Bull. Inst. Zool. Acad. Sin. 29, 11-19 (1990) COMMENT Corresponding GenBank entry: M91245|g336703 (bases 968 to 1918) common_name= freshwater loach(=fish) BASE COUNT 292 a 245 c 222 g 192 u 4491 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....CAAAG GCUUGG-UCC UGACUUUACU -A-UCAGCC- GUAGC-ACA- A--------- 181 ---------- ---------- ---------- ---------- CUUA--CACA UGC-AA-GU- 241 ---------- ---------- ---------- ---------- -CUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC--AGCC CCGUG--AGG AU---GCCCU -U-------- 481 -AA------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------UC 781 CCU------- ---GCCC--- ---------G GGGA------ ---------- ---------- 841 ---------- ---------- ---------- --C------- G-AGGAGC-- GGGC-AUC-- 901 --A------- ---------- ---------- ---GGCUC-A A--------- ---------- 961 --UUAU---- ---------- ---------U -UAGCC-CAA GA--CGCCUU --GC------ 1021 -----CAC-- --------GC -CAC------ ---------- ---------- ACCCC-CAAG 1081 --GGAA---- ----CUCA-G CAGUG-AUAA AAA-UUAAGC CA-UGAGC-- -----ACUAA 1141 ---------- ---GCUUG-- --ACUUA-G- U-UA-GUG-U UA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AG-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGGC C--GGUAAA- A---CUCGUG -CCAGCCACC GC-GGUUA-U ACGA-GA--- 1741 -GGC-CCU-- AGUUGAUAGG -----U---- GCGGC-GUAA AG-GGUGGUU A-AGG----- 1801 ---------- -----AGAGC AAGAA----- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- U-UAAAGC-- 2161 -----CAAG- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- GGAC--CUC- --UUG-GC-- CGUCAUAC-- 2281 -GC--UUCU- ---GAG-U-A U-C-CA-AA- GCCAA----- ---------- ---------- 2341 ---------- ------A-UA C-GAAA--GU A-GCUUUAA- ---------- ---------- 2401 -UAAAACCCA ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------C- CU---GACC- -CCA---C-- GAAAGCUGAG 2641 A-AACAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-UC AGCUAUAAAC CUA--GAC-- 2701 ---GU-UU-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ----AAUCAC AAC------- --------AA ACGUCCG-CC A----GGG-- UACUAC-GAG 3061 C--GUCA-GC UUAAAA--CC CAAAGGAC-U UGG------C GGUG-CCUUA --GAC-CCC- 3121 -CCUAGAG-G AGCCUGUUCU AGA-A-CCG- AUA-ACCCC- --CGUU---- ------AAAC 3181 CUCA--CCAC UUCUAGUCAU CCC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---CGCC-UA 3601 UAUA-CC-GC -C----GUCG -UCA------ GCUU--AC-C CU--GUGA-- -AGG-----C 3661 UCAAUA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AAGC-A AAGU-GGG-- ---------- ---------- ---------- 3781 ---------- ---CACAA-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------CCC -----AAAA- ----C-GU-- C-A----GGU CGAGGU-GUA GCG------- 4441 ---------U ACGA-AGUGG --GAAG---- ---------- ---------- -----AGAUG 4501 GGCUA-CAUU --UUCUA--- ---------- ---------- ---------- ---------- 4561 ---------- --UAA----- ---------- ---------- ---------- ---------- 4621 ---------- ---------U AGAA------ --------UA AGA-CGAAU- -AGC--AU-- 4681 ---------- ---------- -CA--U--GA AAACU-UA-- ---------- ---------- 4741 ------A-U- -GCU-U-G-- AAG-GAGGA- UUU-AGU-AG UA-AA-AAGG A-AAUAG--- 4801 ---AGUG--U C-CUUUU-GA AC-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -CCGGCUC-U GA--GGCG-C GUACACACC- 4921 GCCC-GUC-A CUCU-CCCCU ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------G UAAUAGCAAU -CAAUGUAAA 5101 UAACAACAAA GCACCAACA- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- AGGGGAGGC- AAG-UCGUA- AC-AUGG--- 5281 -U-AAG--UG U--ACCGGAA GGU-G-CACU UGGAUCAAAC C......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Cypr.car_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Cyprinus carpio (carp) -- mitochondrion. REFERENCE 1 AUTHORS Chang,Y.S., Huang,F.L. and Lo,T.B. TITLE The complete nucleotide sequence and gene organization of carp (Cyprinus carpio) mitochondrial genome JOURNAL J. Mol. Evol. 38, 138-155 (1994) REFERENCE 2 AUTHORS Chang,Y.S., Huang,F.L. and Lo,T.B. TITLE The cDNA and primary structure of pregrowth hormones of three species of Cyprinadae: silver carp, bighead carp and grass carp JOURNAL Unpublished (1994) COMMENT Corresponding GenBank entry: X61010|g436882 (bases 998 to 1948) common_name= carp BASE COUNT 309 a 256 c 204 g 182 u 4491 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....CAAAG GCAUGG-UCC CGACCUUAUU -A-UCAGCU- CUAAC-UCA- A--------- 181 ---------- ---------- ---------- ---------- CUUA--CACA UGC-AA-GU- 241 ---------- ---------- ---------- ---------- -CUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC--AACC CAGUG--AAU AU---GCCCU -C-------- 481 -AA------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------UC 781 CC-------- --CCCACCC- ---------- GGGA------ ---------- ---------- 841 ---------- ---------- ---------- --C------- G-AGGAGC-- GGGC-AUC-- 901 --A------- ---------- ---------- ---GGCAC-A A--------- ---------- 961 --ACA----- ---------- ---------U -UAGCC--AA GA--CGCCUA --GC------ 1021 -----CAA-- --------GC -CAC------ ---------- ---------- ACCCC-CAA- 1081 --GGAA---- ----UUCA-G CAGUG-AUAA ACA-UUAAGC CA-UAAGU-- ------GAAA 1141 ---------- ---ACUUG-- --ACUCA-G- U-UA-GUG-U UA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AG-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGGC C--GGUAAA- A---CUCGUG -ACAGCCACC GC-GGUUA-G ACGA-GA--- 1741 -GGC-CCU-- AGUUGAUA-- ---UUAC--A ACGGC-GUAA AG-GGUGGUU A-AGG----- 1801 ---------- -----AUAAA CAAAAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAAAGU-- 2161 -----CAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UGGC--CCCU ---UG-GC-- CGUCAUAC-- 2281 -GC--UUCU- --AGGA-G-U C-C-GA-AG- CCCUA----- ---------- ---------- 2341 ---------- ------A-UA C-GAAA--GU A-ACUUUA-- ---------- ---------- 2401 -AUAAACCCA ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------C- CU---GACC- -CCA---C-- GAAAGCUGAG 2641 A-AACAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-UC AGCCGUAAAC UCA--GAC-- 2701 ---AU-CC-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ----AGCUAC AAU------- -------UAG AUGUCCG-CC A----GGG-- UACUAC-GAG 3061 C--AUUA-GC UUAAAA--CC CAAAGGAC-C UGA------C GGUG-UCUCA --GAC-CCC- 3121 -CCUAGAG-G AGCCUGUUCU AGA-A-CCG- AUA-ACCCC- --CGUU---- ------CAAC 3181 CUCA--CCAC UUCUAGCCAC CCC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCC-UA 3601 UAUA-CC-GC -C----GUCG -UCA------ GCUU--AC-C CU--GUGA-- -AGG-----U 3661 AAUAAAA--- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AAGC-A AAAU-GGG-- ---------- ---------- ---------- 3781 ---------- ---CACAA-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------CCC -----AAAA- ----C-GU-- C-A----GGU CGAGGU-GUA GCG------- 4441 ---------C AUGA-AGUGG --GAAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --UUCUA--- ---------- ---------- ---------- ---------- 4561 ---------- --AUA----- ---------- ---------- ---------- ---------- 4621 ---------- ---------U AGAA------ --------UA UUA-CGAAC- -AUG--CA-- 4681 ---------- ---------- -CC-AU--GA AAC---AA-- ---------- ---------- 4741 ------U-G- -C-U-U-G-- AAG-GAGGA- UUU-AGU-AG UA-AA-AGGG A-AGUAG--- 4801 ---AGUG--U CCCUUUU-GA AC-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -CCGGCUC-U GA--GACG-C GUACACACC- 4921 GCCC-GUC-A CUCU-CCCCU ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- --------GU CAAAACGCAC -CAAAAAUAC 5101 AUAAUACAAC AGCACUGACA ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- AGGGGAGGC- AAG-UCGUA- AC-ACGG--- 5281 -U-AAG--U- U--ACCGGAA -GU-G-CACU UGGAUCAAAC C......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Ltmr.cha_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Latimeria chalumnae (coelacanth) -- mitochondrion. REFERENCE 1 AUTHORS Hedges,S., Hass,C.A. and Maxson,L.R. TITLE Relations of fish and tetrapods JOURNAL Nature 363, 501-502 (1993) COMMENT Corresponding GenBank entry: Z21921|g312008 (bases 1 to 975) common_name= coelacanth BASE COUNT 351 a 262 c 187 g 175 u 4467 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ......AAAG GUUUGG-UCC CAGCCUUGCU -A-UCAAUU- -UAAC-CAG- G--------- 181 ---------- ---------- ---------- ---------- AUUA--CACA UGC-A--AG- 241 ---------- ---------- ---------- ---------- CAUCAA---- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --CU---ACC CAGUG--AGA AU---GCCCC -UG------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --AC----UU 781 AUC------- --CGUCAAA- ---------G AUAA------ ---------- ---------- 841 ---------- ---------- ---------- ---------C A-GGGAGU-- AGGU-AUC-- 901 --A------- ---------- ---------- ---GGCAC-A ---------- --------CA 961 ACAUUAACGC ---------- ---------- -UAGCC-CAA GA--CACCUU --GU------ 1021 -----CCA-- --------GC -CAC-A---- ---------- ---------- CCCCC-AAGG 1081 --GAAC---- -----UCA-G CAGUG-AUAG ACA-UUGAAU AA-UAAGU-- ------GAAA 1141 ---------- ---ACUUG-- --ACUCA-G- C-CA-UGG-U UA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------CA-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGGC C--GGUCAA- C---UCCGUG -CCAGCCACC GC-GGUUA-C ACGG-AA--- 1741 -GAC-CCA-- AAAUGAUAAC ----ACU--A CCGGC-GUAA AG-CGUGAUU A--AA----- 1801 ---------- -GGACACCCA CCAUAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UGGAG--- 2161 -----CCAC- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- AAAU--AACU -AAAGCUGU- ---UAU---- 2281 ACG--CACUU --AAAA-A-A A-U-AU-GC- UCAU------ ---------- ---------- 2341 ---------- ------CACA C-GAAA--GU A-ACUCCA-- ---------- ---------- 2401 -GCACCCAAA GGAACCC--- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------U- G----AAC-- -CCA---C-- GAAAGCUAAG 2641 A-AACAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-UC AGCCCUAAAC ACA--AAC-- 2701 ---A------ ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 AUUCAAACAC ACAC------ ---------- -UGUUCG-CC A----GGG-- AACUAC-AAG 3061 C--GCCA-GC UUCAAA--CC CAAAGGAC-U UGG------C GGCA-CUUCA --AAC-CCA- 3121 -CCUAGAG-G AGCCUGUUCU AAA-A-CUG- ACA-ACCCC- --CACC---- ------UAAC 3181 CUCA--CCAU CCCUAGCCAU UAAACC---- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCC-UA 3601 UAUA-CC-GC -C----GUCG -CCA------ GCCC--AC-C CU--GUGA-- -AGG-----A 3661 AAUACA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -AU-GGGC-A AAAA-UAA-- ---------- ---------- ---------- 3781 ---------- ---AAAAA-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------UUA -----AAAA- ----C-GU-- C-A----GGU CGAGGU-GUA GCA------- 4441 ---------A AUGA-GAUGG --GAAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --UUCU---- ---------- ---------- ---------- ---------- 4561 ---------- AAAUAU---- ---------- ---------- ---------- ---------- 4621 ---------- ---------- AGAA------ --------UA UUA-CGAAA- -AA---UA-- 4681 ---------- ---------- -CA-GC--GA AACC--UG-- ---------- ---------- 4741 ------U-A- -CUU-U-G-- AAG-GAGGA- UUU-AGC-AG UA-AA-AGGG G-AAUAG--- 4801 ---AGAG--C C-CCUCU-GA AA-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -CCGGCCC-U GA--AAUG-C GCACACACC- 4921 GCCC-GUC-A CUCU-CCUCA C---C----- ---------- -------CAA A--------- 4981 ----AU---- --C------- --GG------ CCCAUC---U UU-------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- --------AA 5101 U--------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- -----AAACA AAAA-----C C-AA----G- -C----AU-- ---------- 5221 ACAA------ ---------- G--------U AGAGGAGGC- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--UG U--ACCGGAA G-U-G-CACU UGGACUAAU. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Ncer.for_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Neoceratodus foresteri (Australian lungfish) -- mitochondrion. REFERENCE 1 AUTHORS Hedges,S., Hass,C.A. and Maxson,L.R. TITLE Relations of fish and tetrapods JOURNAL Nature 363, 501-502 (1993) COMMENT Corresponding GenBank entry: Z21926|g312010 (bases 1 to 951) common_name= Australian lungfish BASE COUNT 322 a 238 c 194 g 195 u 4493 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ......AAAG GUUUGG-UCC UGGCCUUACU -A-UCAUUU- UCAGC-UAA- A--------- 181 ---------- ---------- ---------- ---------- AUUA--CACA UGC-AA-G-- 241 ---------- ---------- ---------- ---------- UAUCCG---- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---C--AACC CCGUG--AGA AU---GCCCU ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --UAGU--UG 781 CC-------- --CUACCA-- ---------- GGCA--AAA- ---------- ---------- 841 ---------- ---------- ---------- ---------- --AGGAGC-- AGGC-AUC-- 901 --A------- ---------- ---------- ---GGCUC-A CUU------- ---------- 961 UAUAGCAC-- ---------- ------A-A- ----CC-CAA AA--CGCCUU --GC------ 1021 -----UCA-- --------GC -CAC------ ---------- ---------- ACCCC-CACG 1081 --GGAA---- -----CCA-G CAGUG-AUUA ACA-UUGAGC AA-UAAGC-- ------GAAA 1141 ---------- ---GCUUG-- --ACUCA-G- C-CA-UAG-C CU-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------UC-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----CGGGC C--GGUAAA- C---CUCGUG -CCAGCCACC GC-GGUUA-U ACGA-AG--- 1741 -GAC-CCG-- AAUUGAUAGU -----C---U ACGGC-GUAA AG-CGUGAUU A--GA----- 1801 ---------- UAAGACUAAA AAAUUA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---GAGUU-- 2161 -----AAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- C--C--CCAU -CCAGCCGU- ---CAU---- 2281 ACG--CAUCC --AUGG-G-C C-A-UA-AA- A--------- ---------- ---------- 2341 ---------- ---------U A-CAGC--UA --GACUC--- ---------- ---------- 2401 -UAAACAACU AGACUAC--- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------U- U----GAAU- -UCA---C-- GAAAGCUAAG 2641 A-UACAAAC- UGGGAUUAGA UAN--CC-NA -CUAUGC-UC AGCCAUAAAC UUU--GAC-- 2701 ---AA-GU-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ----ACGUAC AAA------- --------GC UUGUCCG-CC A----GGG-- UACUAC-GAG 3061 G--GCCA-GC UUAAAA--CC CAAAGGAC-U UGG------C GGUG-CCUCA --CAC-CCA- 3121 -CCUAGAG-G AGCCUGUUCU AGA-A-CCG- AUA-AUCCA- --CGUU---- ------AAAC 3181 CUCA--CCGC UUCUUGCCAC UAC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---CGUC-UA 3601 UAUA-CC-AC -C----GUCG -CCA------ GCUU--AC-C CC--GUGA-- -GGG-----U 3661 GAAAAA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AAGC-A CAAU-UGG-- ---------- ---------- ---------- 3781 ---------- ---UACAA-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------CCA -----AAAA- ----C-GU-- C-A----GGU CGAGGU-GUA GCG------- 4441 ---------A AUGA-AGCGG --AAAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --UUCU---- ---------- ---------- ---------- ---------- 4561 ---------- -AUAAA---- ---------- ---------- ---------- ---------- 4621 ---------- ---------- AGAA------ ---------U AUA-CGAAA- -GAC--CU-- 4681 ---------- ---------- -AA--U--GA AAC----A-- ---------- ---------- 4741 ------A-A- -GUC-A-G-- AAG-GUGGA- UUU-AGC-AG UA-AG-AAAA A-CCAAG--- 4801 ---AAUA--U U-UUUCU-GA AA-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UUGGCCA-U GA--GGCGCC GCACACACCG 4921 GCCC-GUC-A CUCU-CCUCA A---UA---- ---------- ------ACAA UC-------- 4981 ----UAA--- ---------- ---------- --ACA----G U--------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ----AAAUAA 5101 CUAA------ ---------- ---------- ---------- ---------- ---------- 5161 ---------- ------AC-A UAA------- ---------- -----UUA-- ---------- 5221 AAA------- ---------U A--------- AGAGGAGGC- AAG-UCGUA- AC-AUGG--- 5281 -U-AAG--CG U--ACCGGAA G-U-C-CG-U UGGAAUAAU. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Gall.gal_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Gallus gallus (chicken) -- mitochondrion. REFERENCE 1 AUTHORS Desjardins,P. and Morais,R. TITLE Sequence and gene organization of the chicken mitochondrial genome: A novel gene order in higher vertebrates JOURNAL J. Mol. Biol. 212, 599-634 (1990) COMMENT Corresponding GenBank entry: X52392|g12960 (bases 1297 to 2272) biol_source= white Leghorn common_name= chicken BASE COUNT 316 a 282 c 178 g 200 u 4466 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....AAAAG ACUUAG-UCC UAACCUUUCU -A-UUGGUU- UUUGC-UAG- ---------- 181 ---------- ---------- ---------- ---------- ACAUA-UACA UGC-AA-GU- 241 ---------- ---------- ---------- ---------- -AUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC--AUCC CAGUG--AAA AU---GCCC- ---------- 481 CCAAAC---- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------CU 781 U--------- --UCUUCCC- ---------- -AAG------ ---------- ---------- 841 ---------- ---------- ---------C AAAA------ ---GGAGC-- AGGU-AUC-- 901 --A------- ---------- ---------- ---GGCAC-A CU-------- ---------- 961 -CAGC----- ---------- --------AG -UAGCC-CAA GA--CGCCUU --GC------ 1021 ----UUAA-- --------GC -CAC------ ---------- ---------- ACCCC-CACG 1081 --GGUA---- ----CUCA-G CAGUA-AUUA ACC-UUAAGC AA-UAAGU-- ------GUAA 1141 ---------- ---ACUUG-- --ACUUA-G- C-CA-UAG-C AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------CCC- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGGU U--GGUAAA- U---CUUGUG -CCAGCCACC GC-GGUCA-U ACAA-GA--- 1741 -AAC-CCA-- AAUCAAUAGC ----UA---C CCGGC-GUAA AG-AGUGGCC ACAU------ 1801 ---------- --GUUAUCUG CACCAG---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- C-UAAGAU-- 2161 -----UAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- AUGCA-A-CC ---AA-GCU- -GUCAUA--- 2281 AGC--CUA-- --AGAU-C-C A-C--C-UA- AACCC----- ---------- ---------- 2341 ---------- ------AA-C C-CAAA--UC C-AUCUUAG- ---------- ---------- 2401 -CCUCAACGA UUA------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- AU--UUUAAC -CCA---C-- GAAAGCUAGG 2641 A-CCCAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-CU AGCCCUAAAU CUA--GAU-- 2701 ---AC----- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 CUCCCAUCAC ACAU------ ---------- GUAUCCG-CC U----GAG-- AACUAC-GAG 3061 C-ACAAACGC UUAAAA--CU CUAAGGAC-U UGG------C GGUG-CCCCA --AAC-CCA- 3121 -CCUAGAG-G AGCCUGUUCU AUA-A-UCG- AUA-AUCCA- --CGAU---- ------UCAC 3181 CCAA--CCAC CCCUUGCCAG CAC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCC-UA 3601 CAUA-CC-GC -C----GUCG -CCA------ GCCC--AC-C UC--UAAU-- -GAA-----A 3661 GAACAACA-- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-GAGC-U CAAU-AGC-- ---------- ---------- ---------- 3781 ---------- ---CCCUC-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------GCU -----AAUA- ----A-GA-- C-A----GGU CAAGGU-AUA GCC------- 4441 ---------U AUGG-GGUGG ---GAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --UUCUA--- ---------- ---------- ---------- ---------- 4561 ---------- --ACA----- ---------- ---------- ---------- ---------- 4621 ---------- ---------U AGAA------ ---------C AAA-CGAAA- -AAG--GA-- 4681 ---------- ---------- -UG--U--GA AACC--CG-- ---------- ---------- 4741 ------C-C- -CUU-A-G-- AAG-GAGGA- UUU-AGC-AG UA-AA-GUGA G-AUCAUACC 4801 CCCUAAG--C U-CACUU-UA AG-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -ACGGCUC-U GA--GGCA-C GUACAUACC- 4921 GCCC-GUC-A CCCU-CUUC- ---------- ---------- -------ACA ---------- 4981 ----AGCC-- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- -AUCAACAUC -AAUAAAUAU 5101 AUACUUCCCC UCCC------ ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----GGCU-- ---------- 5221 AAA------- ---------- ---------- -GACGAGGC- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--UG U--ACCGGAA GGU-G-CACU UAGACUAC.. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Ctrx.cot_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Coturnix coturnix (Japanese quail) -- mitochondrion. REFERENCE 1 AUTHORS Desjardins,P. and Morais,R. TITLE Nucleotide sequence and evolution of coding and noncoding regions of a quail mitochondrial genome JOURNAL J. Mol. Evol. 32, 153-161 (1991) COMMENT Corresponding GenBank entry: X57245|g12853 (bases 1521 to 2491) common_name= Japanese quail BASE COUNT 330 a 263 c 179 g 199 u 4471 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ......AAAG ACUCAG-UCC UAACCUUACU -A-UUGGUU- UUUGC-UAG- ---------- 181 ---------- ---------- ---------- ---------- ACAUA-UACA UGC-AA-GU- 241 ---------- ---------- ---------- ---------- -AUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC--AUCC CAGUG--AGA AU---GCCC- ---------C 481 ACAAAC---- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------CU 781 UU-------- --AUCUUCC- ---------- AAAG------ ---------- ---------- 841 ---------- ---------- ---------C AAAA------ ---GGAGC-- AGGU-AUC-- 901 --A------- ---------- ---------- ---GGCGC-A CU-------- ---------- 961 -UUAAU---- ---------- --------AG UUAGCC-CAA AA--CGCCUU --GU------ 1021 ----UCAA-- --------GC -CAC------ ---------- ---------- ACCCC-CACG 1081 --GGUA---- ----UUCA-G CAGUA-AUUA ACA-UUAAGC AA-UAAGU-- ------GUAA 1141 ---------- ---ACUUG-- --ACUUA-G- C-CA-UAG-C AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---GACCAC- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGGU U--GGUAAA- U---CUUGUG -CCAGCCACC GC-GGUCA-C ACAA-GA--- 1741 -AGC-CCA-- AAUCAAUAGC ----CA---U CCGGC-GUAA AG-AGUGGCC ACAU------ 1801 ---------- --GUUAUCUU CAUUAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- C-UAAGAU-- 2161 -----CAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- AUGGA-A-CC ---AA-GCU- -GUCAUA--- 2281 AGC--CCA-- --GGAU-C-C A-C--C-UA- AGCCC----- ---------- ---------- 2341 ---------- ------AACA U-AAAA--AC C-AUCUUAG- ---------- ---------- 2401 -CCACAU-GA UCA------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- AU--UUCAAU -CCA---C-- GAAAGCCAGG 2641 G-CACAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-CU AGCCCUAAAU CUA--GAU-- 2701 ---AC----- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 --CCACAUAC UUAU------ ---------- GUAUCCG-CC U----GAG-- AACUAC-GAG 3061 C-ACAAACGC UUAAAA--CU CUAAGGAC-U UGG------C GGUG-CCCCA --AAC-CCA- 3121 -CCUAGAG-G AGCCUGUUCU AUA-A-CCG- AUA-AUCCA- --CGAU---- ------CUAC 3181 CCAA--CCAC CCCUUGCCAA CAC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCC-UA 3601 CAUA-CC-GC -C----GUCG -CCA------ GCCC--AC-U U---AAUG-- --AA-----A 3661 GAACAACA-- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-GAGC-U CAAU-AGC-- ---------- ---------- ---------- 3781 ---------- ----CGCC-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------ACU -----AAUA- ----A-GA-- C-A----GGU CAAGGU-AUA GCC------- 4441 ---------U AUGG-GAUGG ---AAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --UUCUA--- ---------- ---------- ---------- ---------- 4561 ---------- --AAA----- ---------- ---------- ---------- ---------- 4621 ---------- ---------U AGAA------ ---------C AAA-CGAAA- -AAG--GA-- 4681 ---------- ---------- -CA--U--GA AACCU-GG-- ---------- ---------- 4741 ------U-C- -CUU-G-G-- AAG-GAGGA- UUU-AGC-AG UA-AA-AUGG G-AUCAC--- 4801 ---UUUG--C C-CACUU-UA AG-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AUGGCCC-U GA--GGCA-C GUACAUACC- 4921 GCCC-GUC-A CCCU-CUUC- ---------- ---------- -------AAA A--------- 4981 ----GCU--- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --ACUAAUAC -CGAUAAAUA 5101 ACACCCAACC AUUA------ ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- -----AGC-- ---------C 5221 AAA------- ---------- ---------- -GACGAGGU- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--UG U--ACCGGAA -GU-G-CACU UAGACCAC.. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Anas_pl3_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Anas platyrhynchos str. Tsai ya (Peking duck) -- mitochondrion. REFERENCE 1 AUTHORS Liu,S.T. and Lin,L.-Y. TITLE Sequence analysis of mitochondrial DNA control region from two genera of ducks JOURNAL Unpublished (1993) COMMENT Corresponding GenBank entry: L16770|g290376 (bases 1188 to 2172) common_name= Peking duck isolate_name= Tsai ya BASE COUNT 312 a 279 c 207 g 187 u 4457 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ......AAAG ACUUAG-UCC UAACCUUACA -G-UUGGUU- UUUGC-UAG- ---------- 181 ---------- ---------- ---------- ---------- ACAUA-UACA UGC-AA-GU- 241 ---------- ---------- ---------- ---------- -AUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC--GCCC CAGUG--UAA AU---GCCCU ---------- 481 CAAUA----- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------GC 781 CU-------- --UCACCCC- ---------- AGGC------ ---------- ---------- 841 ---------- ---------- ---------C UUA------- --AGGAGC-- GGGU-AUC-- 901 --A------- ---------- ---------- ---GGCAC-A C--------- ---------- 961 CCAAGCA--- ---------- ---------G -UAGCC-CAA GA--CGCCUU --GC------ 1021 -----UAA-- --------GC -CAC------ ---------- ---------- GCCCC-CACG 1081 --GGUA---- ----UUCA-G CAGUA-GUUA ACA-UUAAGC AA-UGAGU-- ------GCAA 1141 ---------- ---ACUCG-- --ACUUA-G- U-CA-UAG-C AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------G CCUCCACCC- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ----AAGGGU C--GGUAAA- U---CUUGUG -CCAGCCACC GC-GGUCA-U ACAA-GA--- 1741 -GAC-CCA-- AAUCAACUGU -CCUACA--A GCGGC-GUAA AG-AGUGGUA A-GA------ 1801 ---------- UGCCUAUCCU ACCUAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- C-UAAGAU-- 2161 -----CAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- AUGCA-A-CU ---AA-GCU- -GUCGCA--- 2281 AGC--ACA-- --AGAU-G-C A-C--C-UA- AACACA---- ---------- ---------- 2341 ---------- ------CC-A U-CAAG--AU G-AUCAAAG- ---------- ---------- 2401 -AAACUAGCG AUUAAUU--- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- UG----AAC- -CCA---C-- GAAAGCCAGG 2641 G-CCCAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-CU GGCCCUAAAU CUU--GAU-- 2701 ---AC-UU-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---ACCCUAC CG-------- --------AA GUAUCCG-CC A----GAG-- AACUAC-GAG 3061 C-ACAAACGC UUAAAA--CU CUAAGGAC-U UGG------C GGUG-CCCUA --AAC-CCA- 3121 -CCUAGAG-G AGCCUAUUCU GUA-A-UCG- AUG-AUCCA- --CGAU---- ------CAAC 3181 CCAA--CCGC CCCUUGCCAA GCAC------ ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCC-UA 3601 CAUA-CC-GC -C----GUCG -CCA------ GCCC--AC-C UC--GAAU-- -GAG-----A 3661 GCGCAACA-- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-GGGC-G CAAC-AGC-- ---------- ---------- ---------- 3781 ---------- ---ACCCC-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------GCU -----AAUA- ----A-GA-- C-A----GGU CAAGGU-AUA GCC------- 4441 ---------U AUGG-GACGG ---AAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --CCCUA--- ---------- ---------- ---------- ---------- 4561 ---------- -UGCA----- ---------- ---------- ---------- ---------- 4621 ---------- ---------U AGGG------ --------CA ACA-CGGAA- -AGA--AG-- 4681 ---------- ---------- -UA--U--GA AAC---UG-- ---------- ---------- 4741 ------C-U- -UCU-A-G-- AAG-GAGGA- UUU-AGC-AG UA-AA-GCGG G-ACAAU--- 4801 ---AAAG--C U-CGCUU-UA AG-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -CCGGCCC-U AG--GGCA-C GUACAUACC- 4921 GCCC-GUC-A CCCU-CCUC- ---------- ---------- -------AUA A--------- 4981 ----GC---- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --CACACCCC -CACAUAAUU 5101 AAUACCUCGU AAAU------ ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ------GC-- ---------C 5221 AAA------- ---------- ---------- -GAUGAGGU- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--UG U--ACCGGAA GGU-G-UACU UAGAAUACU. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Fuli.atr_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Fulica atra (Eurasian coot) -- mitochondrion. REFERENCE 1 AUTHORS Mindell,D.P., Knight,A., Baer,C. and Huddleston,C.J. TITLE Slow rates of molecular evolution in birds and the metabolic rate and body temperature hypotheses JOURNAL Mol. Biol. Evol. 13, 422-426 (1996) COMMENT Corresponding GenBank entry: U59668 common_name= Eurasian coot BASE COUNT 313 a 281 c 187 g 191 u 4470 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ......ACAG ACUUAG-UCC UAACCUUACA -G-UUAAUU- CUUGC-CAA- ---------- 181 ---------- ---------- ---------- ---------- ACAUA-UACA UGC--A-GU- 241 ---------- ---------- ---------- ---------- -AUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC--ACUC CAGUGA-UAA AU---GCCCU -UAC------ 481 CCCCUG---- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------CU 781 C--------- ----ACU--- ---------- -GAG------ ---------- ---------- 841 ---------- ---------- ---------G CAGGG---AA G-AGGAGC-- AGGC-AUC-- 901 --A------- ---------- ---------- ---GGCAC-A C--------- ---------- 961 CAAC------ ---------- ---------G -UAGCC-CAA AA--CGCCUU --GC------ 1021 -----UCA-- --------GC -CAC------ ---------- ---------- ACCCC-CACG 1081 --GGUA---- ----UUCA-G CAGUA-AUUA ACA-UUAAGC AA-UGAGU-- ------GAAA 1141 ---------- ---ACUCN-- --ACUUA-G- U-UA-UGG-C AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ----CCCUA- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ----CAGGGC U--GGUAAA- U---CUUGUG -CCAGCCACC GC-GGUCA-U ACAA-GA--- 1741 -AGC-CUA-- AAUUAACCGU ----CA---C CCGGC-GUAA AG-AGUGGUA A-CU------ 1801 ---------- ---UACUAUU AUCUAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- C-UAGGAU-- 2161 -----CAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- GUACA-A-CU ---AA-GCU- -GUCAUA--- 2281 AGC--CCA-- --UGAU-G-U A-C--C-UA- AAACCA---- ---------- ---------- 2341 ---------- ------CC-C U-AAAU--GC G-AUCCUAG- ---------- ---------- 2401 -CACUAACGA UCAACU---- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- AA----ACA- -CCA---C-- UAAAGCCAAG 2641 A-CACAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-UU GGCCCUAAAU CUA--GAU-- 2701 ---AC-UU-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 -CUUCCCCAC UA-------- --------AA GUAUCCG-CC U----GAG-- AACUAC-GAG 3061 C-ACAAACGC UUAAAA--CU CUAAGGAC-U UGG------C GGUG-CUCCA --AAC-CCA- 3121 -CCUAGAG-G AGCCUGUUCU GUA-A-UCG- AUA-ACCCA- --CGAU---- ------AUAC 3181 CCAA--CCCC UCCUUGCCCA AAGC------ ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCC-UA 3601 CAUA-CC-GC -C----GUCC -CCA------ GCUC--AC-C UG--CCCU-- -GAU-----A 3661 GUCUCAAUA- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-GAGC-A CAAU-AGC-- ---------- ---------- ---------- 3781 ---------- ---ACCUC-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------GCU -----AGUA- ----A-GA-- C-A----GGU CAAGGU-AUA GCC------- 4441 ---------C AUGG-AGGGG ---AAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --UUCUA--- ---------- ---------- ---------- ---------- 4561 ---------- --AAA----- ---------- ---------- ---------- ---------- 4621 ---------- ---------U AGAA------ ------AAUC CAA-CGAAA- -AGG--GG-- 4681 ---------- ---------- -CC--U--GA AAU---AC-- ---------- ---------- 4741 ------C-C- -CCU-A-G-- AAG-GAGGA- UUU-AGU-AG UA-AA-GGGA G-AUAAG--- 4801 ---AAUG--C C-CCCUU-AA AC-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UCGGCCC-U GG--AGCA-C GUACAUACC- 4921 GCCC-GUC-A CCCU-CUUC- ---------- ---------- -------ACA GCC------- 4981 ----CCC--- --AACACC-- --UGU----- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ------AACU 5101 AAC------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- --------AC G---CCCACC -----GGG-- ---------C 5221 CAAA------ ---------- ---------- -GACGAGGU- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--UG U--ACCGGAA GUG---CACU UAGCACAA.. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Crel.und_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Crypturellus undulatus (tinamou bird) -- mitochondrion. REFERENCE 1 AUTHORS Mindell,D.P., Knight,A., Baer,C. and Huddleston,C.J. TITLE Slow rates of molecular evolution in birds and the metabolic rate and body temperature hypotheses JOURNAL Mol. Biol. Evol. 13, 422-426 (1996) COMMENT Corresponding GenBank entry: U59665 common_name= tinamou bird BASE COUNT 314 a 256 c 183 g 209 u 4480 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ......AAAG AAUUAG-UAC UAACCUUACC -A-UUAGCU- AUCAU-UAG- ---------- 181 ---------- ---------- ---------- ---------- AUAUA-UACA UGC-A--GU- 241 ---------- ---------- ---------- ---------- -AUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC--GCUC CAGUGA-UAA AU---GCCCU --C------- 481 GCCCAUGUA- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------CC 781 U--------- ---CACUU-- ---------- -AGG------ ---------- ---------- 841 ---------- ---------- ---------- AAA------G --AGGAGC-- GGGU-AUC-- 901 --A------- ---------- ---------- ---GGCUC-A C--------- ---------- 961 UCUU------ ---------- ---------G -UAGCC-CAA AA--CACCUU --GC------ 1021 -----CCA-- --------GC -CAC------ ---------- ---------- ACCCC-CACG 1081 --GGUC---- ----UUCA-G CAGUA-AUUA ACU-UUAAGC UA-UAAGU-- ------GAAA 1141 ---------- ---GCUUG-- --ACUUA-G- U-CA-CAA-U GA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- -------UC- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ----CAGGGC C--GGUAAA- U---CUUGUG -CCAGCCACC GC-GGUCA-U ACAA-GA--- 1741 -GGC-CCA-- AGUUAAUGGU -----A---U UCGGC-GUAA AG-CGUGGAA A-CA------ 1801 ---------- --UGCUAUCU AAACAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- C-UAGGAC-- 2161 -----CAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- AUGCA--UCC ---AA-GCU- -GUCAUA--- 2281 UGC--CUA-- --AGAU-GAC A-C--C-AU- AACCUA---- ---------- ---------- 2341 ---------- ------C--A U-AAAU--UU G-GUCCCAG- ---------- ---------- 2401 -UACUAAAGA CUAAU----- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- UA---UACG- -CCA---C-- GAAAGCCAAG 2641 G-AACAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-UU GGCCCUAAAU CUA--GAU-- 2701 ---GC-UU-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---AACCUAC CA-------- --------AA GCAUUCG-CC C----GAG-- AACUAC-GAG 3061 C-AUAAACGC UUAAAA--CU CUAAGGAC-U UGG------C GGUG-CC-UA --AAC-CCA- 3121 -CCUAGAG-G AGCCUGUUCU AUA-A-UCG- AUA-CCCCA- --CGAU---- ------UCAC 3181 CCAA--CCAU CCCUCGCCCC AAAC------ ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCC-UA 3601 CAUA-CC-GC -C----GUCG -CCA------ GCCC--GC-C UAC-UGAAA- -GAG-----U 3661 AAUA------ ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GC-GGUC-A UAAU-AGU-- ---------- ---------- ---------- 3781 ---------- ---CCAUC-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------ACU -----AAUA- ----A-GA-- C-A----GGU CAAGGU-AUA GCC------- 4441 ---------C AUGG-GAUGG ---AAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --UUCUA--- ---------- ---------- ---------- ---------- 4561 ---------- --AUA----- ---------- ---------- ---------- ---------- 4621 ---------- ---------U AGA------- ------CCAC ACC-CUACU- AAAC--GG-- 4681 ---------- ---------- -AA--U--GA AAU----A-- ---------- ---------- 4741 ------C-C- -CUU-A-G-- AAG-GCGGA- UUU-AGC-AG UA-AA-GUGG A-AUCAG--- 4801 ---AAUG--U C-CACUU-UA AA-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -CUGGCCC-U AG--GGCA-C GUACAUACC- 4921 GCCC-GUC-A CCCU-CCUC- ---------- ---------- -------AUA A--------- 4981 ----GC---- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --AACUAACC -CAAUACAUA 5101 AUACCCUCUC AAA------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ------GC-- ---------U 5221 AAA------- ---------- ---------- -GAUGAGGU- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--UG U--ACCGGAA GGU-G-UACU UAGCAUAU.. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Rhea_am3_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Rhea americana (greater rhea) -- mitochondrion. REFERENCE 1 AUTHORS Mindell,D.P., Knight,A., Baer,C. and Huddleston,C.J. TITLE Slow rates of molecular evolution in birds and the metabolic rate and body temperature hypotheses JOURNAL Mol. Biol. Evol. 13, 422-426 (1996) COMMENT Corresponding GenBank entry: U59664 common_name= greater rhea BASE COUNT 312 a 267 c 193 g 191 u 4479 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....AAAAG AAUUAG-UAC UAACCUUACU -G-UUAAUU- UUAGC-UAA- ---------- 181 ---------- ---------- ---------- ---------- ACAUA-UACA UGC-A--GU- 241 ---------- ---------- ---------- ---------- -AUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC--GCAC CAGUGA-UAA AU---GCCCU ---------- 481 CAG------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------CG 781 ---------- -UCUACCCC- ---------- --CG------ ---------- ---------- 841 ---------- ---------- ---------C AGACC---UA --AGGAGC-- AGGU-AUC-- 901 --A------- ---------- ---------- ---GGCGC-A C--------- ---------- 961 UAGAUC---- ---------- ---------G -UAGCC-CAA GA--CGCCUU --GC------ 1021 -----UCA-- --------GC -CAC------ ---------- ---------- ACCCC-CACG 1081 --GGUA---- ----UUCA-G CAGUA-AUUG AUA-UUAAGC AA-UAAGU-- ------GCAA 1141 ---------- ---ACUUG-- --ACUUA-G- U-UA-UAG-C GA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------CCG- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ----CNGGGU C--GGUAAA- U---CUUGUG -CCAGCCACC GC-GGUCA-C ACAA-GA--- 1741 -GAC-CCG-- AACUAACAGU -----A---A UCGGC-GUAA AG-UGUGGUA A-CA------ 1801 ---------- --UGUUAUCC AGCUAG---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- C-UAAGAC-- 2161 -----CAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- AUGCA-A-CU ---AA-GCU- -GUCAUA--- 2281 AGC--UAA-- --CGAU-G-C A-C--C-UA- AAACCC---- ---------- ---------- 2341 ---------- ------CC-A U-AAAG--AU G-GUCUUAG- ---------- ---------- 2401 -UACCCACGA UCAAUU---- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- UA----AGC- -CCA---C-- GAAAGCUAAG 2641 G-CACAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-UU AGCCCUAAAU CCC--GAU-- 2701 ---AC-UU-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---ACCCCAC CC-------- --------AA GUAUCCG-CC C----GAG-- AACUAC-GAG 3061 C-ACAAACGC UUAAAA--CU CUAAGGAC-U UGG------C GGUG-CC-UA --AAC-CCA- 3121 -CCUAGAG-G AGCCUGUUCU AUA-A-UCG- AUA-ACCCA- --CGAU---- ------ACAC 3181 CCGA--CCAU CUCUUGCCCA UGC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCC-UA 3601 CAUA-CC-GC -C----GUCC -CCA------ GCCC--GC-C UU--AAAU-- -GAG-----A 3661 GAACAACA-- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GC-AAGC-A UAAU-AGC-- ---------- ---------- ---------- 3781 ---------- ---UACCC-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------GCU -----AGCA- ----A-GA-- C-A----GGU CAAGGU-AUA GCA------- 4441 ---------U AUGA-GAUGG ---AAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --UUCUA--- ---------- ---------- ---------- ---------- 4561 ---------- --GUC----- ---------- ---------- ---------- ---------- 4621 ---------- ---------U AGAA------ -------CAG CCA-CGAAA- -GAG--GG-- 4681 ---------- ---------- -CA--U--GA AAC---A--- ---------- ---------- 4741 ------C-C- -CUC-C-G-- AAG-GCGGA- UUU-AGC-AG UA-AA-GUGG G-AUCAG--- 4801 ---AAAG--C C-CACUU-UA AG-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -CCGGCCC-U AG--GGCA-C GUACAUACC- 4921 GCCC-GUC-A CCCU-CCUC- ---------- ---------- -------ACA A--------- 4981 ----GC---- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --UACCCUAC -UAAAUAAAU 5101 AAUACUACUA UUA------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ------GC-- ---------U 5221 AAA------- ---------- ---------- -GAUGAGGC- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--UG U--ACCGGAA GGU-G-CACU UAGCACAC.. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Trch.scr_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Trachemys scripta (red-eared slider turtle; slider turtle; dime-store turtle) -- mitochondrion. REFERENCE 1 AUTHORS Hedges,S.B. TITLE Molecular evidence for the origin of birds JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 2621-2624 (1994) COMMENT Corresponding GenBank entry: L28077|g473678 (bases 1 to 966) common_name= red-eared slider turtle; slider turtle; dime-store turtle BASE COUNT 358 a 233 c 167 g 208 u 4476 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ......AAAG AUUUGG-UCC UAACCUUACU -G-UUAUUU- UUUGC-UAA- A--------- 181 ---------- ---------- ---------- ---------- CUUA--CACA UGC-AA-GU- 241 ---------- ---------- ---------- ---------- -AUCA----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC--ACAC CAGUG--AAA AC---GCCCU ---------- 481 AGCAA----- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------UC 781 U--------- ---AAUA--- ---------- -AGA------ ---------- ---------- 841 ---------- ---------- ---------C UGA------- --AGGAGC-- CGGU-AUC-- 901 --A------- ---------- ---------- ---GGCAC-A ---------- ---------- 961 CCAUGA---- ---------- ---------- -UAGCC-CAA AA--CACCUA --GC------ 1021 ----UUUA-- --------GC -CAC------ ---------- ---------- ACCCC-CAAG 1081 --GGUA---- ----CUCA-G CAGUG-AUAA AAA-UUAAGC AA-UAAGC-- ------GAAA 1141 ---------- ---GCUUG-- --ACUUA-G- U-CA-UAG-C AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------ACA- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----UGAGC U--GGUAAA- U---CUCGUG -CCAGCCACC GC-GGUUA-C ACAA-GA--- 1741 -AGC-CCA-- AACUAACAGA ----CA---A CCGGC-GUAA AA-UGUGAUU A-AAA----- 1801 ---------- -----CUUUU AACCCA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAAAAU-- 2161 -----UAAG- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- -GUG--AACU -ACUUACUU- CGCUGUCA-U 2281 ACG--CAAA- --AGUA-U-A C-A-UU-AA- --CAC----- ---------- ---------- 2341 ---------- ------ACUA U-GAAA--AU A-ACCUUA-- ---------- ---------- 2401 -AUAUAAAGG AACUA----- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------U- UU---GAAC- -CCA---C-- GAUCGCUAAA 2641 A-CACAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-UU AGCCCUAAAC CUA--GAU-- 2701 ---AU-UU-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ----AUAUAC AA-------- --------AA AUAUCCG-CC A----GAG-- AAUUAC-GAG 3061 C--AAAACGC UUAAAA--CU CUAAGGAC-U UGG------C GGUG-C-UCA --AAC-CCA- 3121 -CCUAGAG-G AGCCUGUUCU AUA-A-UCG- AUA-ACCCA- --CGAU---- ------CUAC 3181 CUCA--CCAU CUCUUGCCAA CC-------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCC-UA 3601 UAUA-CC-AC -C----GUCG -CCA------ GCUU--AC-C CC--GUGA-- -GGA-----U 3661 ACAAAA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AAGC-A AGAU-AAU-- ---------- ---------- ---------- 3781 ---------- --AUAAACC- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------AUU -----AACA- ----A-GU-- C-A----GGU CAAGGU-GUA GCUA------ 4441 ---------A CUGA-GAUGG ---AAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --UUCUA--- ---------- ---------- ---------- ---------- 4561 ---------- --UAC----- ---------- ---------- ---------- ---------- 4621 ---------- ---------U AGAA------ ---AUAACAC UCA-CGGAA- -AGGA-AC-- 4681 ---------- ---------- -CA--U--GA AAC---UA-- ---------- ---------- 4741 ------G-U- -CCA-G-C-- AAG-UAGGA- UUU-AGC-AG UA-AA-CUGG G-AACAG--- 4801 ---AGAG--C C-CAAUU-UA AA-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -CCGGUCC-U GA--GGUG-C GCACACACC- 4921 GCCC-GUC-A CCCU-CAUCA A---UAU--- ---------- -------ACA CCA------- 4981 ----AUA--- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---ACCCAUA 5101 AAUAAAC--- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- -----UAU-- ---------A 5221 GCAA------ --------AU A-AAA----C AGAUGAGGC- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--UG C--ACCGGAA GUU---AACU UGGAAUAUC. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Crdy.acu_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Crocodylus acutus (crocodile) -- mitochondrion. REFERENCE 1 AUTHORS Mindell,D.P., Knight,A., Baer,C. and Huddleston,C.J. TITLE Slow rates of molecular evolution in birds and the metabolic rate and body temperature hypotheses JOURNAL Mol. Biol. Evol. 13, 422-426 (1996) COMMENT Corresponding GenBank entry: U59670 common_name= crocodile BASE COUNT 321 a 254 c 205 g 200 u 4462 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....CAAAG GUUUAG-UCC UGACCUUAUU -A-UUAGCU- ACUGC-UCA- A--------- 181 ---------- ---------- ---------- ---------- -CUUA-NANA UGC-N--GC- 241 ---------- ---------- ---------- ---------- AUCAAC---- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC----CC CAGUG-NAGA AC---ACCC- ---------- 481 ---UAA---- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 --------AU AGCCCAACUA AUG------- ---------- ---------- ---------- 841 ---------- ---------- ---------G ACAC------ ---GGAGN-- CGGC-AUC-- 901 --A------- ---------- ---------- ---GGCAC-A U--------- ---------- 961 --UAACA--- ---------- --------CU AUAGCC-CAC GA--CGCCUA --GCC----- 1021 -----UAU-- -------GGC -CAC------ ---------- ---------- ACCCC-CACG 1081 --GGAA---- ----UACA-G CAGUG-AUUA ACA-UUAAAC CA-UGAGC-- ------GAAA 1141 ---------- ---GCUUG-- --AUUUA-G- U-UA-GAG-C AUAA------ ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGGG C--GGCCAAU C---UCCGUG -CCAGCAGCC GC-GGUUA-C ACAG-CUACA 1741 -GCC-CCA-- AGUUAAUAA- -----A---A GCGGC-GUAA AU-UGUGG-- ---------- 1801 ---CUAAGAU UAAAUCUACU AAGUUA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- A-GGCG---- 2161 -----AAA-- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- AGCUU-G-UC ---AA-GCC- -GUGAAA--- 2281 AGC--UAAA- --AACC-U-G C-C------- AAGAACACCA GUAUCAACAU AGCCUUAACC 2341 AACAAGACAC A--------- ---------- ----CCCG-- ---------- ---------- 2401 -AAC------ ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- -CCA---C-- GAAAGCUGGG 2641 G-UACAAAC- UAGGAUUAGA UAC--CC-UA -CUAUGC-CC AGCCCUCAAC AAA--GGU-- 2701 ---GU-A--- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 --CUAACUAC ACAC------ ---------U ACACUCG-CC A----GGG-- GAUUAC-GAG 3061 C--AACUUGC UUAAAA--CC CUAAGGAC-U UGA------C GGUA-UUUCG --AAC-CUA- 3121 -CCUAGAG-G AGCCUGUCCU AUA-A-UCG- ACA-AUACA- --CGAU---- ------CCAC 3181 CCAA--CCAC CUUUUGCCCU AAGC------ ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCC-UG 3601 UAUA-CC-GC -C----GUCG -UAA------ GCUU--AG-C CC--AUGA-- -GGG-----A 3661 CAAGAAC--- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -CU--AGCAC AAUA-ACUCA ---------- ---------- ---------- 3781 ---------- ----CUUC-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -----UGAGC U----AGUA- ----C-GU-- C-A----GGU CAAGGU-GCA GCC------- 4441 ---------A AUAA-GUUGG ---UAG---- ---------- ---------- -----AGAUG 4501 GGCUA-CAUU --UUCUA--- ---------- ---------- ---------- ---------- 4561 ---------- -CAUCA---- ---------- ---------- ---------- ---------- 4621 ---------- ---------U AGAA------ -----AUUGG UCA-CGGAG- -AGG--CC-- 4681 ---------- ---------- -UG--U--GA AAC---CA-- ---------- ---------- 4741 ------G-G- -ACU-G-UCA AAG-ACGGA- UUU-AGC-AG UA-AA-UUAA G-AGAAG--- 4801 ---AGUGC-C U--AAUU-GA AG-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AUGGCCC-C GG--AAUA-U GUACACACC- 4921 GCCC-GUC-A CCCU-CCUC- ---------- ---------- -------GA- ---------- 4981 ----AUUUAA ------CCCA ACUUUUG--- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- --CUACAUAA 5101 CGCACA---- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ------UAGA A--------- --UUCAAU-- ---------- 5221 -GA------- ---------- ---------- -GAUGAGGA- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--CG U--ACCGGAA GGU-G-UGCU UGGAACAU.. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Spnd.pun_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Sphenodon punctatus (tuatara(=reptile)) -- mitochondrion. REFERENCE 1 AUTHORS Hedges,S.B. TITLE Molecular evidence for the origin of birds JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 2621-2624 (1994) COMMENT Corresponding GenBank entry: L28076|g473510 (bases 1 to 904) common_name= tuatara(=reptile) BASE COUNT 328 a 219 c 172 g 185 u 4538 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ......AAAG AUUUGG-UCA UAAACUUACU -G-UUACUU- AACUC-UUA- A--------- 181 ---------- ---------- ---------- ---------- AUUA--CACA UGC-AA-GU- 241 ---------- ---------- ---------- ---------- -AUCA----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC--ACAC CAGUG--AAA AU---GCCCU -U-------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --AAA---A- 781 ---------- ----CAA--- ---------- ---UCACCA- ---------- ---------- 841 ---------- ---------- ---------- ---------- A-AGGAGC-- CGGC-AUC-- 901 --A------- ---------- ---------- ---GGCAC-A C--------- ---------- 961 -CAAA----- ---------- ---------G -UGGCC-AAA GA--CGCCUU --GC------ 1021 -----CUC-- --------GC -CAC------ ---------- ---------- ACCCC-CAAG 1081 --GGUA---- ----CACA-G CAGUG-AUUA AUA-UUAAGC CA-UAAGU-- ------GAAA 1141 ---------- ---ACUUG-- --ACUUA-G- U-UA-UAG-A GA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------CC-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----ACGGC C--GGUCAA- U---UUCGUG -CCAGCCACC GC-GGUUA-A ACGA-AUUUU 1741 AGGC-CGA-- AAGUAAGAGC ----CA---A ACGGC-GUAA AA--GUAACU A-AAU----- 1801 -CACCACCCC UUCACUAAAC CCAAGA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 -----AAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ACUA--AGAU ---GA-GUU- --GUAA---- 2281 AAC------- --CUCU---A C-A-UG-AA- GAUG------ ---------- ---------- 2341 ---------- ------UCUU G-GGGC--CA A--------- ---------- ---------- 2401 -GAUAAAA-- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------U- UG----AAC- -UUA---C-- UAAAAUUAAG 2641 G-GUCAAAC- UGGGAUUAGA U-C--CC-CA -CUAUGC-UU AAUCCUAAAC AUC--GAC-- 2701 ---AC-CU-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 --AAACAUAC AA-------- --------GG GUGUUCG-CC C----GGG-- AACUAC-CAG 3061 C--AAAACGC UAGAAA--CC CUAAAGAC-U UGA------C GGUG-CCCCA --AAA-CCC- 3121 -CCUAGAG-G AGCCUGUUCU AUA-A-UUG- AUG-AUCCG- --CAAU---- ------AAAC 3181 CUCA--CCAU UUUUCGCCCC C--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCC-UA 3601 UAUA-CC-GC -C----GUCG -CCA------ GUCU--AC-C UU--GUGA-- -AAG-----A 3661 ACUAA----- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AGGU-C AAAC-AGC-- ---------- ---------- ---------- 3781 ---------- ---AUUACC- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------GCU -----AAUA- ----C-GU-- C-A----GGU CAAGGU-GCA GCC------- 4441 ---------A AUAA-AAUGG --AAAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --CCC----- ---------- ---------- ---------- ---------- 4561 ---------- ACAAAACC-- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -GGG------ --------AA AUA-CUAAA- -AGU--UA-- 4681 ---------- ---------- -AA-AU--GA AAA---AA-- ---------- ---------- 4741 ------U-A- -ACA-A-G-- AAG-GUGGA- UUU-AGU-AG UA-AA-CUAG A-ACCAU--- 4801 ---AAUA--U C-AAGUU-GA AA-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AAGGCUC-U GG--AGCG-C GUACACACC- 4921 GCCC-GUC-A CCCU-CCUAU U--------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- -------AAA 5101 CC-------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------A AAAGGAGGC- AAG-UCGUA- AC-ACGG--- 5281 -U-AAG--CA U--ACUGGAA AGU-G-UGCU UGGAAA.... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Alli.mis_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Alligator mississippiensis (American alligator) -- mitochondrion. REFERENCE 1 AUTHORS Hedges,S.B. TITLE Molecular evidence for the origin of birds JOURNAL Proc. Natl. Acad. Sci. U.S.A. in press (1994) COMMENT Corresponding GenBank entry: L28074|g472798 (bases 1 to 939) common_name= American alligator BASE COUNT 319 a 251 c 191 g 178 u 4503 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ......AGAA UCUUGG-UCU UAAAUCUCCU -A-UUACUU- UUCCC-CCU- A--------- 181 ---------- ---------- ---------- ---------- -AUUA-UACA UGC-AA-G-- 241 ---------- ---------- ---------- ---------- ACUCCC---- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---C--ACAA CAGUG--AAA CA---GCCC- ---------- 481 ---ACC---- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------A UAAC------ ---------- AGGU-UUG-- 901 --G------- ---------- ---------- ---AGCCG-G U--------- ---------- 961 -AUCAGGC-- ---------- --------AA -CCGCC-CAA GA--CGCCAA --GC------ 1021 ---AAUUCA- --------GC -CAC------ ---------- ---------- ACCCC-CACG 1081 --GGUC---- ----CACA-G CAGUA-GUUA AUA-UUAGGC CA-UAAGC-- ------GAAA 1141 ---------- ---GCCUG-- --ACCUA-G- U-AA-GGG-G GA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- -----CACU- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGGC C--GGUUAA- U---CUCGUG -CCAGCGACC GC-GGUUA-U ACGA-CA--- 1741 -GAC-CCA-- AAAUAAUAG- -----A---U ACGGC-GUAA AG-CACGACU A-GUA----- 1801 ---------- -CUGACGUCC CUACAC---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- C-UAGGGA-- 2161 -----AGA-- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- AUAAC-C-CC ---AG-GCU- -GUAAAA--- 2281 AGC--CAUA- --GGCA-A-U A-A--G-AA- CCAUAU---- ---------- ---------- 2341 ---------- ---------- ---------- --UCCCUAA- ---------- ---------- 2401 -CAACAAACA AC-------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------U- AC----AAC- -UCG---U-- GAAAGCUAGG 2641 A-CAUAAAC- UAAGAUUAGA UAC--CU-UA -CUAUAC-CU AGCUGUAACA C----AAU-- 2701 ---AA-U--- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 --CAAACAAC CU-------- ---------A UUAUUCG-CC A----AAU-- AACUAC-GAG 3061 C--AAUA-GC UUAAAA--CU CAAAGGAC-U UGA------C GGCA-CUUUA --AAC-CCC- 3121 -CCUAGAG-G AGCCUGUCCU AUA-A-UCG- ACA-GUACA- --CGUU---- ------ACAC 3181 CCGA--CCAC CUUUAGCCUA CUC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGUC-UG 3601 UAUA-CC-GC -C----GUCG -CAA------ GCCC--GU-C CC-AUUUGA- -GGG-----A 3661 AACAAAAC-- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GC-GCGC-- -AAC-AGC-- ---------- ---------- ---------- 3781 ---------- --UCAACCGA ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------GCU -----AACA- ----C-GU-- C-A----GGU CAAGGU-GCA GCC------- 4441 ---------A ACAA-GGUGG ---AAG---- ---------- ---------- -----AGAUG 4501 GGCUA-CAUU --UUCU---- ---------- ---------- ---------- ---------- 4561 ---------- CAACAUGU-- ---------- ---------- ---------- ---------- 4621 ---------- ---------- AGAA------ -----AUAUU CAA-CGGAG- -AGC--CC-- 4681 ---------- ---------- -UA--U--GA AAUA--CA-- ---------- ---------- 4741 ------G-G- -ACUGUCA-- AAG--CCGA- UUU-AGC-AG UA-AA-CUGG G--AAAG--- 4801 ---AAUA--C C-UAGUU-GA AG-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UCGGUAA-C GA--AGUG-C GUACACACC- 4921 GCCG-GUC-A CCUC-C-UC- ---------- ---------- -------GAA ---------- 4981 ----CCCAAC -------AAA AUGCC----- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ----CAAACA 5101 ACA------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- --------GG CACAAU---- --GUUGGG-- ---------- 5221 CAA------- ---------- ---------- -GAUGGGGA- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--CG U--ACCGGAA GGU-G-CACU UGGAACAU.. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Sclp.und_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Sceloporus undulatus (North American desert lizard; fence lizard) -- mitochondrion. REFERENCE 1 AUTHORS Hedges,S.B. TITLE Molecular evidence for the origin of birds JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 2621-2624 (1994) COMMENT Corresponding GenBank entry: L28075|g473506 (bases 1 to 947) common_name= North American desert lizard; fence lizard BASE COUNT 354 a 235 c 165 g 192 u 4496 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ......ACAG UUUUGG-UCC UAAACUUACU -G-CUACUU- UUAAU-CAA- A--------- 181 ---------- ---------- ---------- ---------- UUUA--CACA UGC-AA-GC- 241 ---------- ---------- ---------- ---------- -AUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --AC--ACAC CAGUG--AAA CAC--GCCC- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 --------UA ACACAGAACA AAC------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---GGAGC-- AGGU-AUC-- 901 --A------- ---------- ---------- ---GGC---- ---------- ---------A 961 CAACAAAA-- ---------- ---------- ---GCC-CAA GA--CACCAA --GC------ 1021 -----UUU-- --------GC -CAC------ ---------- ---------- ACCCA-CACG 1081 --GGUC---- ----AUCA-G CAGUG-AUAA ACA-UUAAGC AA-UAAGC-G AACACACCAA 1141 AAUUAAA--- ---GCUUG-- --ACUUA-G- U-UA-UGG-U UA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AC-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGGC C--GGUAAA- C---CUCGUG -CCAGCCACC GC-GGUUA-U ACGA-GG--- 1741 -GGC-CCA-- AAGCAGCAGA ----CU---C UCGGC-GUAA AU-AGUGG-- ---------- 1801 -----CCAGA AUAACUACCA ACACAC---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- U-AAAAAC-- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- -UAAACAAUA G--CCUAACC GUAAAACACA 2341 GGCUAAAUGA AACCAAAC-- ---------- --GUUUUUA- ---------- ---------- 2401 -ACAACCGGU AAUUUGAC-- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- -CCA---C-- GAAAACUAAG 2641 A-AACAAAC- UAGGAUUAGA UAC--CC-UA -CUAUGC-UU AGUCGUUAAU AC---GAU-- 2701 ---AU-U--- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---ACAACAC UAA------- ---------A AUAUCCG-CC A----GAA-- AACUAC-GAG 3061 C--GAAAAGC UUAAAA--CU CAAAGGAC-U UGC------G G-UG-CUCCA --CAC-CGA- 3121 -CUUAGAG-G AGCCUGUCCU AUA-A-UCG- AUA-CUCCA- --CGCU---- ------AAAC 3181 CUCA--CCAA UCUUUGCCAA AUC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCC-UA 3601 UAUA-CC-GC -C----GUCG -UCA------ ACCU--AC-C UC--AUGA-- -GAG-----A 3661 AAAACA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AAGU-A CAAA-AGUU- ---------- ---------- ---------- 3781 ---------- ----UCAA-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ------AACU -----AAAA- ----C-GU-- C-A----GGU CAAGGU-GUA GCU------- 4441 ---------A AUAG-AAUGG ---GAG---- ---------- ---------- -----AGAUG 4501 GGCUA-CAUU --UUUUA--- ---------- ---------- ---------- ---------- 4561 ---------- --AUA----- ---------- ---------- ---------- ---------- 4621 ---------- ---------U AAAA------ --------CA CAA-CGGCA- UGGU--UC-- 4681 ---------- ---------- -UA--U--GA AAC---UU-- ---------- ---------- 4741 ------C-U- -ACC-U-G-- AAG-GAGGA- UUU-AAU-AG UA-AA-CUAA C-AAGAA--- 4801 ---AAAA--G U-UAAUU-UU AA-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ACACGCUC-U GG--AGCG-C CGCCACACC- 4921 GCCC-GUC-A CCCU-CAUCU U--------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ----ACACCA ACACCAAUAU 5101 ACAUAAACCA CUACAACAAC A--------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------A AGAUGAGGN- AAG-UCGUA- AC-AUGG--- 5281 -U-AAG--CG C--ACUGGAA AGU-G-UGCU UGGACUAG.. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Didp.vi2_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Didelphis virginiana (Virginian opossum) -- mitochondrion. REFERENCE 1 AUTHORS Janke,A., Feldmaier-Fuchs,G., Thomas,W.K., von Haeseler,A. and Paabo,S. TITLE The marsupial mitochondrial genome and the evolution of placental mammals JOURNAL Genetics 137, 243-256 (1994) COMMENT Corresponding GenBank entry: Z29573|g452251 (bases 72 to 1022) geog_source= UCalifornia, Berkeley biol_source= fresh road-killed animal common_name= Virginian opossum BASE COUNT 365 a 188 c 157 g 241 u 4491 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ......AUAG GUUUGG-UCC UAGCCUUAUU -A-UUAGUU- CUAAU-UAG- A--------- 181 ---------- ---------- ---------- ---------- CCUA--CACA UGC-AA-GU- 241 ---------- ---------- ---------- ---------- -UUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC--UACC CAGUG--AGA AU---GCCCU -UU------- 481 AAGU------ ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------CU 781 UA-------- ---UAAAU-- ---------- UAAG------ ---------- ---------- 841 ---------- ---------- ---------- -CA------A A-AGGAGC-- UGGU-AUC-- 901 --A------- ---------- ---------- ---GGCAC-A CA-------- ---------- 961 --AAA----- ---------- --------UG -UAGCC-GAU AA--CACCUU --G------- 1021 ----CUUUA- ---------C -CAC------ ---------- ---------- ACCCC-CACG 1081 --GGAG---- -----ACA-G CAGUG-AUUA AAA-UUAAGC AA-UAAAC-- ------GAAA 1141 ---------- ---GUUUG-- --ACUAA-G- U-CA-UAA-U UU-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ----ACAUU- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGGU U--GGUCAA- U---UUCGUG -CCAGCCACC GC-GGUCA-U ACGA-UU--- 1741 -AAC-CCA-- AAUUAAUAAA -----U---A ACGGC-GUAA AG-AGUGUUU A-AGU----- 1801 ---------- ----UAUAUA CAAAAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAAAGU-- 2161 -----UAAU- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- AAUU--AACU ---A--AAC- UGUAGCAC-- 2281 GUU---CU-- --AGUU-A-A U-A-UU-AA- AAUACA---- ---------- ---------- 2341 ---------- ------U-AA U-AAAA--AU G-ACUUUA-- ---------- ---------- 2401 -AUAUC---- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------A- CC---GACU- -ACA---C-- GAAAACUAAG 2641 A-CACAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-UU AGUAAUAAAC UAA--AAU-- 2701 ---AA-UU-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 --UAACAAAC AA-------- --------AA UUAUUCG-CC A----GAG-- AACUAC-UAG 3061 C--AAUU-GC UUAAAA--CU CAAAGGAC-U UGG------C GGUG-CCCUA --AAC-CCA- 3121 -CCUAGAG-G AGCCUGUUCU AUA-A-UCG- AUA-AACCC- --CGAU---- ------AAAC 3181 CAGA--CCUU AUCUUGCCAA UAC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCC-UA 3601 UAUA-CC-GC -C----AUCG -UCA------ GCUA--AC-C UU--UAAA-- -AAG-----A 3661 AUUACA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AAGC-A AAAU-CAU-- ---------- ---------- ---------- 3781 ---------- ----ACAAC- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------AUA -----AAAA- ----C-GU-- U-A----GGU CAAGGU-GUA GCA------- 4441 ---------U AUGA-UAAGG --AAAG---- ---------- ---------- -----UAAUG 4501 GGCUA-CAUU --CUCUA--- ---------- ---------- ---------- ---------- 4561 ---------- --CUA----- ---------- ---------- ---------- ---------- 4621 ---------- ---------U AGAG------ --------CA UAA-CGAAU- -CAU--AU-- 4681 ---------- ---------- -UA--U--GA AACUA-AA-- ---------- ---------- 4741 ------A-U- -GCU-U-G-- AAG-GAGGA- UUU-AGU-AG UA-AA-UUAA G-AAUAG--- 4801 ---AGAG--C U-UAAUU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UAGGCAA-U AG--GGCG-C GCACACACC- 4921 GCCC-GUC-A CCCU-CCUC- ---------- ---------- -------AAC A--------- 4981 ----UAA--- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ----UAAUCC -AACAUACCU 5101 AAUACAAUUA UUCA------ ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- -----UUA-- ---------- 5221 -AA------- ---------- ---------- -GAGGAGAA- AAG-UCGUA- AC-ACGG--- 5281 -U-AAG--UG U--ACUGGAA AGU-G-CACU UGGAAUA... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Orrh.an3_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Ornithorhynchus anatinus (duckbill platypus) -- mitochondrion. REFERENCE 1 AUTHORS Springer,M.S., Hollar,L.J. and Burk,A. TITLE Compensatory substitutions and the evolution of the mitochondrial 12S rRNA gene in mammals JOURNAL Mol. Biol. Evol. 12, 1138-1150 (1995) COMMENT Corresponding GenBank entry: U33498|g1065404 common_name= duckbill platypus BASE COUNT 344 a 210 c 168 g 222 u 4498 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....UAAAG GUUUGG-UCC UAGCCUUACU -G-UUAGAU- UUGAU-UAG- A--------- 181 ---------- ---------- ---------- ---------- UUUA--UACA UGC-AA-GU- 241 ---------- ---------- ---------- ---------- -AUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC--AACC CAGUG--AGA AU---ACCCU ---------- 481 --AA------ ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------AA 781 A--------- -CUCUUAACA ---------- -AGU------ ---------- ---------- 841 ---------- ---------- ---------U AGA------- --AGGAGU-- AGAU-AUC-- 901 --A------- ---------- ---------- ---GGCAC-A CU-------- ---------- 961 --AA------ ---------- --------AG -UAGCC-CAC AA--CAUCUU --GC------ 1021 ----CCUA-- --------GC -CAC------ ---------- ---------- ACCCC-CACG 1081 --GGAC---- -----ACA-G CAGUA-AUAG AAA-UUAGUC AA-UAAAC-- ------GCAA 1141 ---------- ---GUUUG-- --AACAA-G- U-CA-UAA-U CA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AUA- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGAGU C--GGUAAA- U---UUCGUG -CCAGCCACC GC-GGUCA-U ACGA-UU--- 1741 -GAC-UCA-- ACCUAACAA- ----AU---A ACGGU-GUAA AA-CGUGUUU A-AAA----- 1801 ---------- -----ACUUA AACUAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAAGAU-- 2161 -----UAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- -GUA--GAAC --UA--AACU -GUGAUA--A 2281 GUC---AUA- --GUUAAU-A C---UAAAG- CCAU------ ---------- ---------- 2341 ---------- ------C-UA C-GAAA--GU G-AUCUUA-- ---------- ---------- 2401 -GACUA---- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------A- UU---GAAU- -ACA---C-- GAUAGCUAAG 2641 G-UACAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-UU AGCCCUAAAC UCA--AGU-- 2701 ---CG-UU-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---UAAUAAC AA-------- --------AA CUACUCA-CC A----GAG-- AACUAC-UAG 3061 C--AACA-GC UUAAAA--CU CAAAGGAC-U UGG------C GGUG-CUUCA ---CC-CC-- 3121 -UCUAGAG-G AGCCUGUUCU AUA-A-UCG- AUA-AACCC- --CGAU---- ------ACAC 3181 CUCA--CCAU CUUUUGCCAC UAC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---UGUC-UA 3601 UAUA-CC-GC -C----AUCG -UCA------ GCCA--AC-C CU--AAAA-- -AGG-----A 3661 ACAAAA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AGGC-G UAAU-CAU-- ---------- ---------- ---------- 3781 ---------- ---UUUUC-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------AUA -----AAAA- ----C-GU-- U-A----GGU CAAGGU-GUA GCC------- 4441 ---------U AUAA-GAUGG ---AAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --UUCU---- ---------- ---------- ---------- ---------- 4561 ---------- -ACAUU---- ---------- ---------- ---------- ---------- 4621 ---------- ---------- AGAA------ ---------C AUA-CGAAA- -AAC--UC-- 4681 ---------- ---------- -UA--U--GA AAC---UA-- ---------- ---------- 4741 ------G-A- -GUA-U-U-- AAG-GAGGA- UUU-AGU-AG UA-AG-CCAA G-AAUAG--- 4801 ---AGAG--C U-UGACU-GA AC-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UGGGCAA-U GA--AGCA-C GCACACACC- 4921 GCCC-GUC-A CCCU-CCUC- ---------- ---------- -------AAU C--------- 4981 ----AAG--- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ----CAACAC -AAACAUUCC 5101 UAAAAUCCCA ACGCU----- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- -----UUU-- ---------- 5221 CAA------- ---------- ---------- -GAGGAGAU- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--CA U--ACCGGAA GGU-G-UGCU UGGAAUAUC. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Mus_musc_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Mus musculus (common or house mouse) -- mitochondrion. REFERENCE 1 AUTHORS Bibb,M.J., Van Etten,R.A., Wright,C.T., Walberg,M.W. and Clayton,D.A. TITLE Sequence and gene organization of mouse mitochondrial DNA JOURNAL Cell 26, 167-180 (1981) REFERENCE 2 AUTHORS Van Etten,R.A., Walberg,M.W. and Clayton,D.A. TITLE Precise localization and nucleotide sequence of the two mouse mitochondrial rRNA genes and three immediately adjacent novel tRNA genes JOURNAL Cell 22, 157-170 (1980) COMMENT Corresponding GenBank entry: J01420 (bases 70 to 1024) biol_source= L cell line LA9 common_name= common or house mouse BASE COUNT 361 a 188 c 154 g 252 u 4487 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ......AAAG GUUUGG-UCC UGGCCUUAUA -A-UUAAUU- AGAGG-UAA- A--------- 181 ---------- ---------- ---------- ---------- AUUA--CACA UGC-AA-AC- 241 ---------- ---------- ---------- ---------- -CUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --AU--AGAC CGGUG--UAA AA---UCCCU -UAA-A---- 481 -CA------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------UU 781 U--------- ---ACUU--- ---------- -AAA------ ---------- ---------- 841 ---------- ---------- ---------- -A-----UUU A-AGGAGA-- GGGU-AUC-- 901 --A------- ---------- ---------- ---AGCAC-A U--------- ---------- 961 -UAAA----- ---------- ---------A -UAGCU-UAA GA--CACCUU --GC------ 1021 -----CUA-- --------GC -CAC------ ---------- ---------- ACCCC-CACG 1081 --GGAC---- -----UCA-G CAGUG-AUAA AUA-UUAAGC AA-UAAAC-- ------GAAA 1141 ---------- ---GUUUG-- --ACUAA-G- U-UA-UAC-C UC-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------UU-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGGU U--GGUAAA- U---UUCGUG -CCAGCCACC GC-GGUCA-U ACGA-UU--- 1741 -AAC-CCA-- AACUAAUUAU -----C---U UCGGC-GUAA AA-CGUGUCA ACUA------ 1801 ---------- ----UAAAUA AAUAAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAGAAU-- 2161 -----UAAAA ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- -UCC---AAC UUAUAUGUG- -AAAAUU--- 2281 CAU---U--- --GUUA-G-G A---CCUAA- ACUCAA---- ---------- ---------- 2341 ---------- ------U-AA C-GAAA--GU A-AUUCUA-- ---------- ---------- 2401 -GUCAUU--- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- UA---UAAU- -ACA---C-- GACAGCUAAG 2641 A-CCCAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-UU AGCCAUAAAC CUA--AAU-- 2701 ---AA-UU-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 -AAAUUUAAC AA-------- --------AA CUAUUUG-CC A----GAG-- AACUAC-UAG 3061 C--CAUA-GC UUAAAA--CU CAAAGGAC-U UGG------C GGUA-CUUUA --UAU-CCA- 3121 -UCUAGAG-G AGCCUGUUCU AUA-A-UCG- AUA-AACCC- --CGCU---- ------CUAC 3181 CUCA--CCAU CUCUUGCUAA UUC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCC-UA 3601 UAUA-CC-GC -C----AUCU -UCA------ GCAA--AC-C CU--AAAA-- -AGG-----U 3661 AUUAAA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AAGC-A AAAG-AAU-- ---------- ---------- ---------- 3781 ---------- ---CAAAC-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------AUA -----AAAA- ----C-GU-- U-A----GGU CAAGGU-GUA GCC------- 4441 ---------A AUGA-AAUGG --GAAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --UUCUU--- ---------- ---------- ---------- ---------- 4561 ---------- -AUAA----- ---------- ---------- ---------- ---------- 4621 ---------- ---------A AGAA------ --------CA UUA-CUAUA- -CCC--UU-- 4681 ---------- ---------- -UA--U--GA AAC---UA-- ---------- ---------- 4741 ------A-A- -GGA-C-U-- AAG-GAGGA- UUU-AGU-AG UA-AA-UUAA G-AAUAG--- 4801 ---AGAG--C U-UAAUU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UGAGCAA-U GA--AGUA-C GCACACACC- 4921 GCCC-GUC-A CCCU-CCUCA A---AUU--A -A-AU----- ------UAAA C--------- 4981 ----UUAA-- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ------CAUA 5101 A--------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----UUAA-- -----UUUCU 5221 AGACAUCC-- ---GUUU--A U--------G AGAGGAGAU- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--CA U--ACUGGAA AGU-G-UGCU UGGAAUAAU. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Alrp.me4_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Ailuropoda melanoleuca (giant panda) -- mitochondrion. REFERENCE 1 AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) COMMENT Corresponding GenBank entry: Y08521 common_name= giant panda BASE COUNT 342 a 210 c 178 g 236 u 4476 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....UAAAG GUUUGG-UCC UAGCCUUCCU -A-UUAGCC- AUUAA-CAA- G--------- 181 ---------- ---------- ---------- ---------- AUUA--CACA UGU-AA-GU- 241 ---------- ---------- ---------- ---------- -CUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --AC--GCUC CAGUG--AAA AU---GCCCC ---------- 481 -UUAA----- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------GU 781 C--------- -CUCUUAGAC ---------- -GAC------ ---------- ---------- 841 ---------- ---------- ---------C UAA------- --AGGAGC-- GGGU-AUC-- 901 --A------- ---------- ---------- ---AGCAC-A CC-------- ---------- 961 --UUAU---- ---------- --------GG -UAGCU-CAC AA--CGCCUU --GC------ 1021 ----UUAG-- ---------C -CAC------ ---------- ---------- ACCCC-CACG 1081 --GGAA---- -----ACA-G CAGUG-AUAA AAA-UUAAGC UA-UGAAC-- ------GAAA 1141 ---------- ---GUUCG-- --ACUAA-G- C-UA-UGU-U AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- -----UACU- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGGU U--GGUAAA- U---CUCGUG -CCAGCCACC GC-GGUCA-U ACGA-UU--- 1741 -AAC-UCG-- AGUUAAUAGG ----CC---U ACGGC-GUAA AG-CGUGUAA A-AG------ 1801 ---------- AAAAAAUCUC CUCUAC---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAAAGU-- 2161 -----UAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- -GUA--UGAU --UA--AGCU -GUAAAA--A 2281 GCU---ACC- --AUUAAU-A C---UAAAA- UAAA------ ---------- ---------- 2341 ---------- ------C-UA C-GAAA--GU G-ACUUUA-- ---------- ---------- 2401 -AAAUU---- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------U- CU---GAUU- -ACA---C-- GAUAGCUAGG 2641 G-CCCAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-CU AGCUCUAAAC AUA--GAU-- 2701 ---AU-UU-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 --UACUAAAC AA-------- --------AA CUAUUCG-CC A----GAG-- AACUAC-UAG 3061 C--AACA-GC UUAAAA--CU CAAAGGAC-U UGG------C GGUG-CUUUA --UAU-CCC- 3121 -CCUAGAG-G AGCCUGUUCU GUA-A-UCG- AUA-AACCC- --CGAU---- ------AGAC 3181 CUCA--CCAU CCCUUGCUAA UUC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGUU-UA 3601 UAUA-CC-GC -C----AUCU -UCA------ GCAA--AC-C CU--UAAA-- -AGG-----A 3661 AAAAAA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AAGC-A UAAC-UAC-- ---------- ---------- ---------- 3781 ---------- ---CCUAC-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------AUA -----AAAA- ----A-GU-- U-A----GGU CAAGGU-GUA ACC------- 4441 ---------U AUGG-GCUGG --GAAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --UUCU---- ---------- ---------- ---------- ---------- 4561 ---------- -AUUCA---- ---------- ---------- ---------- ---------- 4621 ---------- ---------- AGAA------ ----CAACUU CUA-CGAAA- -ACU--UU-- 4681 ---------- ---------- -UA--U--GA AAC---UA-- ---------- ---------- 4741 ------A-A- -AGC-U-A-- AAG-GCGGA- UUU-AGU-AG UA-AA-UUAA G-AAUAG--- 4801 ---AGAG--C U-UAAUU-GA AC-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AGGGCAA-U GA--AGCA-C GCACACACC- 4921 GCCC-GUC-A CCCU-CCUCG A--------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- --------GU GAUAUAAUUU AAUUAUAACC 5101 UAUUUAAACU AAGCAAAGC- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- --------AU A--------- AGAGGAGAC- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--CA U--ACUGGAA AGU-G-UGCU UGGAUGAGC. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Zlph.ca2_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Zalophus californianus (California sea lion) -- mitochondrion. REFERENCE 1 AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) COMMENT Corresponding GenBank entry: Y08525 common_name= California sea lion BASE COUNT 353 a 226 c 168 g 215 u 4480 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....CAAAG GUUUGG-UCC UAGCCCUUCC -G-UUAGUU- UUUAA-UAA- A--------- 181 ---------- ---------- ---------- ---------- AUUA--UACA UGC-AA-GC- 241 ---------- ---------- ---------- ---------- -UUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --AC--GCCC CAGUG--AGA AU---GCCCU ---------- 481 -UCAG----- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------AU 781 C--------- -CCUACAGCC ---------- -GAU------ ---------- ---------- 841 ---------- ---------- ---------C AAA------- --AGGAGC-- GGGU-AUC-- 901 --A------- ---------- ---------- ---AGCAC-A CU-------- ---------- 961 -CAACG---- ---------- --------AG -UAGCU-CAC AA--CGCCUU --GC------ 1021 ----UCAA-- ---------C -CAC------ ---------- ---------- ACCCC-CACG 1081 --GGAC---- -----ACA-G CAGUA-AUAA AAA-UUAAGC CA-UGAAC-- ------GAAA 1141 ---------- ---GUUCG-- --ACUAA-G- U-UA-UAU-U AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ----UCAUA- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGGU U--GGUAAA- U---UUCGUG -CCAGCCACC GC-GGUCA-U ACGA-UU--- 1741 -AAC-CCA-- AACUAACGGG ----CU---C ACGGC-GUAA AG-CGUGUAA A-AGA----- 1801 ---------- -----UCUAC CUACAC---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAAAGU-- 2161 -----UAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- -AUU--UAAC --CA--AGCC -GUAAAA--A 2281 GCU---GCC- --GUUA-A-U A---CAAAA- UAUA------ ---------- ---------- 2341 ---------- ------C-UA C-GAAA--GU G-ACUUUA-- ---------- ---------- 2401 -AUAAU---- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------U- CU---GAUU- -ACA---C-- GAUAGCUAAG 2641 A-CCCAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-UU AGCCCUAAAC AUA--AAU-- 2701 ---AA-UU-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 --CACUUAAC AA-------- --------AA UUAUCCG-CC A----GAG-- AACUAC-UAG 3061 C--AAUA-GC UUAAAA--CU CAAAGGAC-U UGG------C GGUG-CUUCA --CAU-CCC- 3121 -CCUAGAG-G AGCCUGUUCU AUA-A-UCG- AUA-AACCC- --CGAU---- ------AAAC 3181 CUCA--CCAC CUCUUGCUAA UCC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGUC-UA 3601 UAUA-CC-GC -C----AUCC -UCA------ GCAA--AC-C CU--UAAA-- -AGG-----A 3661 AAGAAA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AAGC-A UAAU-CAU-- ---------- ---------- ---------- 3781 ---------- ---CGCAC-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------GUA -----AAAA- ----A-GU-- U-A----GGU CAAGGU-GUA ACC------- 4441 ---------C AUGA-GGUGG --GAAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --UUCU---- ---------- ---------- ---------- ---------- 4561 ---------- -AAACA---- ---------- ---------- ---------- ---------- 4621 ---------- ---------- AGAA------ ----CACACC GUA-CGAAA- -GUU--AU-- 4681 ---------- ---------- -UA--U--GA AAC---UA-- ---------- ---------- 4741 ------A-U- -AAC-U-A-- AAG-GUGGA- UUU-AGU-AG UA-AA-CUAA G-AAUAG--- 4801 ---AGAG--C U-UAAUU-GA AC-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UGGGCCA-U GA--AGCA-C GCACACACC- 4921 GCCC-GUC-A CCCU-CCUCA A--------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- -------AUA AUAACCUCAA AGCACAUACA 5101 UAAAUCAAUA UAAAACCAUA ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- AGAGGAGAU- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--CA U--ACUGGAA AGU-G-UGCU UGGAUAAAU. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Phca.vit_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Phoca vitulina (harbor seal) -- mitochondrion. REFERENCE 1 AUTHORS Arnason,U. and Johnsson,E. TITLE The complete mitochondrial DNA sequence of the harbor seal, Phoca vitulina JOURNAL J. Mol. Evol. 34, 493-505 (1992) COMMENT Corresponding GenBank entry: X63726|g13431 (bases 1005 to 1965) geog_source= river Thjorsa, Iceland biol_source= pup drowned in salmon fishing net common_name= harbor seal BASE COUNT 355 a 229 c 166 g 211 u 4481 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....CAAAG GUUUGG-UCC UGGCCUUCCU -A-UUAGUU- UUUAA-UAA- G--------- 181 ---------- ---------- ---------- ---------- AUUA--UACA UGC-AA-GC- 241 ---------- ---------- ---------- ---------- -CUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC--GCCC CGGUG--AAA AU---GCCCU ---------- 481 -CCA------ ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------AA 781 UC-------- -CCAAUAACC ---------- GAUU------ ---------- ---------- 841 ---------- ---------- ---------- AAA------- --AGGAGC-- AGGU-AUC-- 901 --A------- ---------- ---------- ---AGCAC-A CU-------- ---------- 961 -AAACA---- ---------- --------AG -UAGCU-UAC AA--CGCCUU --GC------ 1021 ----UCAA-- ---------C -CAC------ ---------- ---------- ACCCC-CACG 1081 --GGAU---- -----ACA-G CAGUA-AUAA AAA-UUAAGC UA-UGAAC-- ------GAAA 1141 ---------- ---GUUUG-- --ACUAA-G- C-UA-UAU-U AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---ACCUCC- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGGU U--GGUAAA- U---UUCGUG -CCAGCCACC GC-GGUCA-U ACGA-UU--- 1741 -AAC-CCA-- AACUAAUAGG ----CC---C UCGGC-GUAA AG-CGUGUUA A-AGA----- 1801 ---------- -----UCAAC CCACAC---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAAAGC-- 2161 -----UAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- -ACC--UAAC --CA--AGCC -GUAAAA--A 2281 GCU---ACC- --GUUA-A-C A---UAAAA- UAGA------ ---------- ---------- 2341 ---------- ------C-CA C-GAAA--GU G-ACUUUA-- ---------- ---------- 2401 -CUAAU---- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------U- CU---GACU- -GCA---C-- GAUAGCUAAG 2641 A-UCCAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-UU AGCCCUAAAC AUA--AAU-- 2701 ---AA-UU-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 --CACGUAAC AA-------- --------AA UUAUUCG-CC A----GAG-- AACUAC-UAG 3061 C--AACA-GC UUAAAA--CU CAAAGGAC-U UGG------C GGUG-CUUCA --CAC-CCC- 3121 -UCUAGAG-G AGCCUGUUCU GUA-A-UCG- AUA-AACCC- --CGAU---- ------AAAC 3181 CUCA--CCAU UCCUUGCUAA UAC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGUC-UA 3601 UAUA-CC-GC -C----AUCU -UCA------ GCAA--AC-C CU--UAAA-- -AGG-----A 3661 ACAAAA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AAGC-A CAAU-AAU-- ---------- ---------- ---------- 3781 ---------- ---CGCUAC- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------AUA -----AAAA- ----A-GU-- U-A----GGU CAAGGU-GUA ACC------- 4441 ---------U AUGG-AAUGG --GAAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --UUCU---- ---------- ---------- ---------- ---------- 4561 ---------- -AAAUA---- ---------- ---------- ---------- ---------- 4621 ---------- ---------- AGAA------ -----CAAUC AUA-CGAAA- -GUU--UU-- 4681 ---------- ---------- -UA--U--GA AAU---UA-- ---------- ---------- 4741 ------ACA- -AAC-U-A-- AAG-GUGGA- UUU-AGU-AG UA-AG-CUAA G-AAUAG--- 4801 ---AGAG--C U-UAGCU-GA AC-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -CGGGCCA-U GA--AGCA-C GCACACACC- 4921 GCCC-GUC-A CCCU-CCUCA A--------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- -------AUA AACUCUACAA GCUACAUAAA 5101 ACCAACACAA AACAUAC--- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- AGAGGAGAU- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--CA U--ACUGGAA AGU-G-UGCU UGGAUAAAC. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Cans.fa3_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Canis familiaris (dog) -- mitochondrion. REFERENCE 1 AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) COMMENT Corresponding GenBank entry: Y08507 common_name= dog BASE COUNT 346 a 210 c 166 g 232 u 4488 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....UAAAG GUUUGG-UCC UAGCCUUCCU -A-UUAGUU- UUUAG-UAG- A--------- 181 ---------- ---------- ---------- ---------- CUUA--CACA UGC-AA-GC- 241 ---------- ---------- ---------- ---------- -CUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --AC--GCCC CAGUG--AGA AU---GCCCU ---------- 481 -UAA------ ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------AA 781 UCA------- ---CCAG--- ---------U GAUC------ ---------- ---------- 841 ---------- ---------- ---------- UAA------- --AGGAGC-- AGGU-AUC-- 901 --A------- ---------- ---------- ---AGCAC-A CU-------- ---------- 961 --CUUA---- ---------- --------AG -UAGCU-CAU AA--CACCUU --GC------ 1021 ----UAAG-- ---------C -CAC------ ---------- ---------- ACCCC-CACG 1081 --GGAU---- -----ACA-G CAGUG-AUAA AAA-UUAAGC CA-UAAAC-- ------GAAA 1141 ---------- ---GUUUG-- --ACUAA-G- C-CA-UAC-U AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- -------AU- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGGU U--GGUAAA- U---UUCGUG -CCAGCCACC GC-GGUCA-U ACGA-UU--- 1741 -AAC-CCA-- AACUAAUAGG ----CC---U ACGGC-GUAA AG-CGUGUUC A-AGA----- 1801 ---------- -----UAUUU UUACAC---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAAAGU-- 2161 -----UAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- -ACU--UAAC --UA--AGCC -GUAAAA--A 2281 GCU---ACA- --GUUA-U-C A---UAAAA- UAAA------ ---------- ---------- 2341 ---------- ------C-CA C-GAAA--GU G-ACUUUA-- ---------- ---------- 2401 -UAAUAA--- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------U- CU---GACU- -ACA---C-- GAUAGCUAAG 2641 A-CCCAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-UU AGCCCUAAAC AUA--GAU-- 2701 ---AA-UU-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---UUACAAC AA-------- --------AA UAAUUCG-CC A----GAG-- GACUAC-UAG 3061 C--AAUA-GC UUAAAA--CU CAAAGGAC-U UGG------C GGUG-CUUUA --UAU-CCC- 3121 -UCUAGAG-G AGCCUGUUCU AUA-A-UCG- AUA-AACCC- --CGAU---- ------AAAC 3181 CUCA--CCAC CUUUCGCUAA UUC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGUC-UA 3601 UAUA-CC-GC -C----AUCU -UCA------ GCAA--AC-C CU--CAAA-- -AGG-----U 3661 AGAACA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AAGC-A CAAU-CAU-- ---------- ---------- ---------- 3781 ---------- ----UUUAC- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------AUA -----AAAA- ----A-GU-- U-A----GGU CAAGGU-GUA ACU------- 4441 ---------U AUGA-GGUGG --GAAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --UUCU---- ---------- ---------- ---------- ---------- 4561 ---------- ACCC-A---- ---------- ---------- ---------- ---------- 4621 ---------- ---------- AGAA------ ------CAUU UCA-CGAAU- -GUU--UU-- 4681 ---------- ---------- -UA--U--GA AAU---UA-- ---------- ---------- 4741 ------A-A- -AAC-U-G-- AAG-GAGGA- UUU-AGU-AG UA-AA-UUAA G-AAUAG--- 4801 ---AGAG--C U-UAAUU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AGGGCCA-U GA--AGCA-C GCACACACC- 4921 GCCC-GUC-A CCCU-CCUCA A---GU---- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- -------AAU AAGACACAAC CAUAACCAUA 5101 UUAACUUAAC UAAAAC---- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------A C--------A AGAGGAGAC- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--CA U--ACCGGAA GGU-G-UGCU UGGAUUAAU. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Pant.le4_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Panthera leo (lion) -- mitochondrion. REFERENCE 1 AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) COMMENT Corresponding GenBank entry: Y08505 common_name= lion BASE COUNT 345 a 231 c 171 g 215 u 4480 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....CAAAG GUUUGG-UCC UAGCCUUUCC -A-UUAGUU- AUUAA-UAA- A--------- 181 ---------- ---------- ---------- ---------- AUUA--CACA UGC-AA-GC- 241 ---------- ---------- ---------- ---------- -CUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC--AUCC CGGUG--AAA AU---GCCCU -UU------- 481 --A------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------AA 781 UCAC------ ----CUA--- --------AU GAUC------ ---------- ---------- 841 ---------- ---------- ---------- -C-------A A-AGGAGC-- UGGU-AUC-- 901 --A------- ---------- ---------- ---AGCAC-A CA-------- ---------- 961 -ACCAU---- ---------- --------UG -UAGCU-CAC AA--CACCUU --GC------ 1021 -----UCA-- --------GC -CAC------ ---------- ---------- ACCCC-CACG 1081 --GGAU---- -----ACA-G CAGUG-AUAA AAA-UUAAGC UA-UGAAU-- ------GAAA 1141 ---------- ---GUUCG-- --ACUAA-G- C-UA-UAU-U AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- -----ACU-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGGU U--GGUAAA- U---UUCGUG -CCAGCCACC GC-GGUCA-U ACGA-UU--- 1741 -AAC-CCA-- GACUAAUAGA ----CU---U ACGGC-GUAA AG-CGUGUUA --CAG----- 1801 ---------- -AAGAAAUAU ACAUAC---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAAAGU-- 2161 -----UAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- CCUU--AACU ---AG-GCU- -GUAAAA--- 2281 AGC--UGC-- --AGUU-A-A C-A-UA-AA- AAUACA---- ---------- ---------- 2341 ---------- ------G-CA C-GAAA--GU A-ACUUUA-- ---------- ---------- 2401 -AUACCU--- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------C- CG----ACC- -ACA---C-- GAUAGCUAAG 2641 A-UCCAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-UU AGCCCUAAAC CUA--GAU-- 2701 ---AG-UU-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 -AACCCAAAC AA-------- --------AA CUAUCCG-CC A----GAG-- AACUAC-UAG 3061 C--AACA-GC UUAAAA--CU CAAAGGAC-U UGG------C GGUG-CUUUA --CAU-CCC- 3121 -UCUAGAG-G AGCCUGUUCU AUA-A-UCG- AUA-AACCC- --CGAU---- ------AAAC 3181 CUCA--CCAU CUCUUGCUAA UUC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCC-UA 3601 UAUA-CC-GC -C----AUCU -UCA------ GCAA--AC-C CU--AAAA-- -AGG-----A 3661 AGAAAA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AAGC-A CAAG-UGU-- ---------- ---------- ---------- 3781 ---------- ---CUUAAC- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------ACA -----AAAA- ----A-GU-- U-A----GGU CAAGGU-GUA GCC------- 4441 ---------U AUGA-GAUGG --GAAG---- ---------- ---------- -----CAAUG 4501 GGCUA-CAUU --UUCUA--- ---------- ---------- ---------- ---------- 4561 ---------- -CAAU----- ---------- ---------- ---------- ---------- 4621 ---------- ---------U AGAA------ -------CAC CCA-CGAAA- -AUC--CU-- 4681 ---------- ---------- -UA--U--GA AAC---UA-- ---------- ---------- 4741 ------A-G- -CAU-U-C-- AAG-GAGGA- UUU-AGC-AG UA-AAUUUGA G-AAUAG--- 4801 ---AGAG--C U-CAAUU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -CGGGCCA-U GA--AGCA-C GCACACACC- 4921 GCCC-GUC-A CCCU-CCUCA A---GU---- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- --------GA CUAGUCCCUA AAGAAACCUA 5101 UUCAAACCAC UACAUCC--- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------A C--------A AGAGGAGAC- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--CA U--ACUGGAA AGU-G-UGCU UGGAUGA... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Stnl.co1_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Stenella coeruleoalba (striped dolphin) -- mitochondrion. REFERENCE 1 AUTHORS Douzery,E. TITLE Evolutionary relationships among Cetacea based on the sequence of the mitochondrial 12S rRNA gene: possible paraphyly of toothed-whales (odontocetes) long separate evolution of sperm whales (Physteridae) JOURNAL C. R. Acad. Sci. III 316, 1511-1518 (1993) COMMENT Corresponding GenBank entry: X78168|g577990 biol_source= isolate T-1080, female common_name= striped dolphin BASE COUNT 351 a 226 c 179 g 217 u 4469 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....UAAAG GUUUGG-UCC UGGCCUUUCU -A-UUAGUU- CUUAG-CAG- A--------- 181 ---------- ---------- ---------- ---------- CUUA--CACA UGC-AA-GC- 241 ---------- ---------- ---------- ---------- -AUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --GC--AUCC CAGUG--AGA AU---GCCCU ---------- 481 CCAA------ ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------AU 781 C--------- --AUUAAA-- ---------- -GAC------ ---------- ---------- 841 ---------- ---------- ---------U AAA------- --AGGAGC-- GGGC-AUC-- 901 --A------- ---------- ---------- ---AGCAC-A CU-------- ---------- 961 -AUACC---- ---------- --------AG -UAGCU-CAU AA--CGCCUU --GC------ 1021 -----UUA-- --------GC -CAC------ ---------- ---------- ACCCC-CACG 1081 --GGAU---- -----ACA-G CAGUG-ACAA GAA-UUAGGC UA-UGAAC-- ------GAAA 1141 ---------- ---GUUUG-- --ACCUA-G- C-CA-UGC-U AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------UU-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGGU U--GGUAAA- U---UUCGUG -CCAGCCACC GC-GGUCA-U ACGA-UU--- 1741 -GAC-CCA-- AAUUAAUAGA ----CA---C CCGGC-GUAA AG-AGUGUCA A-AG------ 1801 ---------- ---AACAAUA UAAAAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAAAGU-- 2161 -----CAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- CCUU--AAUU ---AA-GCU- -GUAAAA--- 2281 AGC--CAU-- --AAUU-A-A A-A-UUAAG- UUAAA----- ---------- ---------- 2341 ---------- ------C-UA C-GAAA--GU A-ACUUUA-- ---------- ---------- 2401 -CCAUAAA-- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- CU---GAGU- -ACA---C-- GACAACUAAG 2641 A-CCCAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-UU AGUCGUAACU UA---AAU-- 2701 ---AA-UC-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---CUAAAAC AA-------- --------GA UUAUUCG-CC A----GAG-- UACUAU-CGG 3061 C--AACA-GC C-AAAA--CU CAAAGGAC-U UGG------C GGUG-CUUCA --UAU-CCU- 3121 -UCUAGAG-G AGCCUGUUCU GUA-A-ACG- AUA-AACCA- --CGAU---- ------UAAC 3181 CUCA--CCAA UCCUUGCUAC UUC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGUC-UA 3601 UAUA-CC-GC -C----AUCU -UCA------ GCAA--AC-C CU--AAAAA- -AGG-----A 3661 ACGAAA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AAGC-A CAAC-UAC-- ---------- ---------- ---------- 3781 ---------- ---UGCAC-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------GUA -----AAAA- ----C-GU-- U-A----GGU CAAGGU-GUA ACC------- 4441 ---------U AUGG-AUUGG --GAAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --UUCU---- ---------- ---------- ---------- ---------- 4561 ---------- AUAAUA---- ---------- ---------- ---------- ---------- 4621 ---------- ---------- AGAA-CA-CC CCUUAAACUC ACA-CGAAA- -GUU--UU-- 4681 ---------- ---------- -UA--U--GA AACC--UA-- ---------- ---------- 4741 ------A-A- -AAC-U-A-- AAG-GAGGA- UUU-AGC-AG UA-AA-UUAA G-AAUAG--- 4801 ---AAUG--C U-UAAUU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AAGGCCA-U GA--AGCA-C GCACACACC- 4921 GCCC-GUC-A CCCU-CCUCA A---GUG-C- ---------- -------CAU A--------- 4981 ----GC---- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ----AAAGCC -CCAGAUUGC 5101 UAACCCACGC UAA------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ------GC-- ---------- 5221 AAGC------ -------GUA C--------A AGAGGAGAC- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--CA U--ACCGGAA GGU-G-UGCU UGGAUAAAC. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Bala.ph2_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Balaenoptera physalus (fin whale or common rorqual) -- mitochondrion. REFERENCE 1 AUTHORS Arnason,U., Gullberg,A. and Widegren,B. TITLE The complete nucleotide sequence of the mitochondrial DNA of the fin whale, balaenoptera physalus JOURNAL J. Mol. Evol. 33, 556-568 (1991) COMMENT Corresponding GenBank entry: X61145|g12772 (bases 496 to 1471) common_name= fin whale or common rorqual BASE COUNT 341 a 238 c 185 g 212 u 4466 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....UAAAG GUUUGG-UCC CAGCCUUUCU -A-UUAGUU- CUUAA-CAG- A--------- 181 ---------- ---------- ---------- ---------- CUUA--CACA UGC-AA-GU- 241 ---------- ---------- ---------- ---------- -AUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --AC--AUCC CAGUG--AGA AC---GCCCU ---------- 481 CUA------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------AA 781 UC-------- ---AUAAA-- ---------- GAUU------ ---------- ---------- 841 ---------- ---------- ---------- AAA------- --AGGAGC-- GGGU-AUC-- 901 --A------- ---------- ---------- ---AGCAC-G CUA------- ---------- 961 -GCAC----- ---------- ------U-AG -CAGCU-CAC AA--CGCCUC --GC------ 1021 -----UUA-- --------GC -CAC------ ---------- ---------- GCCCC-CACG 1081 --GGAC---- -----ACA-G CAGUG-AUAA AAA-UUAAGC UA-UAAAC-- ------GAAA 1141 ---------- ---GUUCG-- --ACUAA-G- U-CA-UGU-U AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------UUU- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ----AAGGGU U--GGUAAA- C---UUCGUG -CCAGCCACC GC-GGUCA-U ACGA-UC--- 1741 -GAC-CCA-- AAUUAAUAGA ----AG---C ACGGC-GUAA AG-AGUGUUA A-GGA----- 1801 ---------- -----GCCAC AUGAAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAAAGU-- 2161 -----CAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- CCUU--AAUU ---AA-GCU- -GUAAAA--- 2281 AGC--CCU-- --AAUU-A-A A-A-UU-AA- GCCAAA---- ---------- ---------- 2341 ---------- ------C-UA C-GAAA--GU G-ACUUUA-- ---------- ---------- 2401 -AUAUAA--- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------U- CU---GAUC- -ACA---C-- GACAGCUAAG 2641 A-UCCAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-UU AGUCGUAAAC CCC--AAU-- 2701 ---AG-UC-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---ACAAAAC AA-------- --------GA CUAUUCG-CC A----GAG-- UACUAC-UAG 3061 C--AACA-GC CUAAAA--CU CAAAGGAC-U UGG------C GGUG-CCUCA --UAC-CCA- 3121 -UCUAGAG-G AGCCUGUUCU GUA-A-CCG- AUA-AACCC- --CGAU---- ------CAAC 3181 CUCA--CCAA CCCUUGCUAC UUC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGUC-UA 3601 UAUA-CC-GC -C----AUCU -UCA------ GCAA--AC-C CU---AAA-- -GGG-----A 3661 G-AAAA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AAGC-A UAAC-CAU-- ---------- ---------- ---------- 3781 ---------- ---CCUAC-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------AUA -----AAAA- ----C-GU-- U-A----GGU CAAGGU-GUA ACC------- 4441 ---------C AUGG-GUUGG --GAAG---- ---------- ---------- -----UAAUG 4501 GGCUA-CAUU --UUCU---- ---------- ---------- ---------- ---------- 4561 ---------- AAGCUA---- ---------- ---------- ---------- ---------- 4621 ---------- ---------- AGAA-CAUCC CCUAU-ACUC ACA-CGAAA- -GUU--UU-- 4681 ---------- ---------- -UA--U--GA AACU--UA-- ---------- ---------- 4741 ------A-A- -AAC-U-A-- AAG-GAGGA- UUU-AGU-AG UA-AA-UCAA G-AGCAG--- 4801 ---AGUG--C U-UGAUU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AAGGCCA-U GAG-GGCA-C GCACACACC- 4921 GCCC-GUC-A CCCU-CCUCA A---GUA--- ---------- ------CCCC A--------- 4981 ----GCU--- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ------AUAA -ACCCCAGUU 5101 CGUUAACUCA ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- -----GGC-- -------CAA 5221 GCAA-UUA-- --------UA C--------G AGAGGAGAC- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--CA U--ACCGGAA GGU-G-UGCU UGGACAAAA. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Epts.fu2_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Eptesicus fuscus (big brown bat) -- mitochondrion. REFERENCE 1 AUTHORS Springer,M.S. and Douzery,E. TITLE Secondary structure and patterns of evolution among mammalian mitochondrial 12S rRNA molecules JOURNAL J. Mol. Evol. 43, 357-373 (1996) COMMENT Corresponding GenBank entry: U61082 (bases 1 to 958) common_name= big brown bat BASE COUNT 353 a 212 c 180 g 213 u 4484 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....CAUAG GUUUGG-UCC UGGCCUUUCU -A-UUAGUU- GUUAA-UAA- A--------- 181 ---------- ---------- ---------- ---------- UUUA--CACA UGC-AA-GA- 241 ---------- ---------- ---------- ---------- -AUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --CC--GCCC CUGUG--AGA AU---GCCCU ---------- 481 CUAC------ ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------GC 781 CA-------- ---UUAAU-- ---------- UGGC------ ---------- ---------- 841 ---------- ---------- ---------A UAA------- --AGGAGC-- UGGU-AUC-- 901 --A------- ---------- ---------- ---AGCAC-A CU-------- ---------- 961 -AAAA----- ---------- --------AG -UAGCU-CAC AA--CACCUU --GC------ 1021 -----UCA-- --------GC -CAC------ ---------- ---------- CCCCC-CACG 1081 --GGAG---- -----ACA-G CAGUG-ACAA AAA-UUAAGC AA-UAGAC-- ------GAAA 1141 ---------- ---GUCUG-- --ACUAA-G- U-UA-UAU-U AU-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------CC-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGAC U--GGUAAA- U---CUCGUG -CCAGCCACC GC-GGUCA-U ACGA-UU--- 1741 -AGA-CCA-- AACUAAUAGA ----UA---U UCGGC-GUAA AG-GGUGUUU U-AGA----- 1801 ---------- --AAUCAAAC AAUUAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAAAGU-- 2161 -----UAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- CCCU--AACU ---AA-GCU- -GUAAAA--- 2281 AGC--CCU-- --AGUU-A-C C-G-UA-AA- ACAAA----- ---------- ---------- 2341 ---------- ------U-AA C-GAAA--GU A-ACUUUA-- ---------- ---------- 2401 -AAAAA---- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------U- CU---GACU- -ACA---C-- GAUAGCUAAG 2641 A-CCCAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-UU AGCCAUAAAC ACA--GAA-- 2701 ---GA-UU-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ----AUAAAC AA-------- --------AA UUAUUCG-CC A----GAG-- UACUAC-CAG 3061 C--AAGG-GC UAGAAA--CU CAAAGGAC-U UGG------C GGUG-CCUUA --AAU-CCA- 3121 -UCUAGAG-G AGCCUGUUCU AUA-A-UCG- AUA-AACCC- --CGAU---- ------AGAC 3181 CUCA--CCAA CCCUUGCCAA AUC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCU-UA 3601 UAUA-CC-GC -C----AUCU -UCA------ GCAA--AC-C CU--AAAA-- -AGG-----A 3661 AAAACA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AAGC-A UAAA-CAU-- ---------- ---------- ---------- 3781 ---------- ----UAAC-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------AUA -----AAAA- ----C-GU-- U-A----GGU CAAGGU-GUA GCC------- 4441 ---------U AUGG-GUUGG --AAAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --CCUCG--- ---------- ---------- ---------- ---------- 4561 ---------- --GAC----- ---------- ---------- ---------- ---------- 4621 ---------- ---------C GAGG------ ---UAAUAUU UUA-CGAAA- -ACC--UA-- 4681 ---------- ---------- -UG--U--GA AAU---CA-- ---------- ---------- 4741 ------A-C- -AGU-C-A-- AAG-GAGGA- UUU-AGC-AG UA-AA-UUAA G-AAUAG--- 4801 ---AGUG--C U-UAAUU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AAGGCCA-U GA--GGCA-C GCACACACC- 4921 GCCC-GUC-A CCCU-CCUCA A---GCG--- ---------- --------AA ---------- 4981 ----GAUAU- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------AA -AAUAAUAUC 5101 UAAAUAUAAG ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---GUAUC-- ---------- 5221 AGCC------ --------CG C--------A AGAGGAGAU- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--UG U--ACUGGAA AGU-G-CACU UGGACAACA. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Bos_taur_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Bos taurus (ox; cow) -- mitochondrion. REFERENCE 1 AUTHORS Anderson,S., de Bruijn,M.H.L., Coulson,A.R., Eperon,I.C., Sanger,F. and Young,I.G. TITLE Complete sequence of bovine mitochondrial DNA: Conserved features of the mammalian mitochondrial genome JOURNAL J. Mol. Biol. 156, 683-717 (1982) COMMENT Corresponding GenBank entry: V00654|g12800 (bases 431 to 1385) biol_source= holstein common_name= ox; cow BASE COUNT 351 a 216 c 172 g 216 u 4487 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....CAUAG GUUUGG-UCC CAGCCUUCCU -G-UUAACU- CUUAA-UAA- A--------- 181 ---------- ---------- ---------- ---------- CUUA--CACA UGC-AA-GC- 241 ---------- ---------- ---------- ---------- -AUCU----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --AC--ACCC CAGUG--AGA AU---GCCCU -CU------- 481 --A------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------GG 781 UU-------- ---AUUAA-- ---------- AACU------ ---------- ---------- 841 ---------- ---------- ---------- -A-------A G-AGGAGC-- UGGC-AUC-- 901 --A------- ---------- ---------- ---AGCAC-A CA-------- ---------- 961 --CCC----- ---------- --------UG -UAGCU-CAC GA--CGCCUU --G------- 1021 ----CUUAA- ---------C -CAC------ ---------- ---------- ACCCC--ACG 1081 --GGAA---- -----ACA-G CAGUG-ACAA AAA-UUAAGC CA-UAAAC-- ------GAAA 1141 ---------- ---GUUUG-- --ACUAA-G- U-UA-UAU-U AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------UU-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGGU U--GGUAAA- U---CUCGUG -CCAGCCACC GC-GGUCA-U ACGA-UU--- 1741 -AAC-CCA-- AGCUAACAGG ----AG---U ACGGC-GUAA AA-CGUGUUA A-AGC----- 1801 ---------- -----ACCAU ACCAAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAGGGU-- 2161 -----UAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUCU--AACU ---AA-GCU- -GUAAAA--- 2281 AGC--CAU-- --GAUU-A-A A-A-UA-AA- AAUAAA---- ---------- ---------- 2341 ---------- ------U-GA C-GAAA--GU G-ACCCUA-- ---------- ---------- 2401 -CAAUA---- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------G- CC----GAC- -GCA---C-- UAUAGCUAAG 2641 A-CCCAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-UU AGCCCUAAAC ACA--GAU-- 2701 ---AA-UU-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 --ACAUAAAC AA-------- --------AA UUAUUCG-CC A----GAG-- UACUAC-UAG 3061 C--AACA-GC UUAAAA--CU CAAAGGAC-U UGG------C GGUG-CUUUA --UAU-CCU- 3121 -UCUAGAG-G AGCCUGUUCU AUA-A-UCG- AUA-AACCC- --CGAU---- ------AAAC 3181 CUCA--CCAA UUCUUGCUAA UAC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGUC-UA 3601 UAUA-CC-GC -C----AUCU -UCA------ GCAA--AC-C CU--AAAA-- -AGG-----A 3661 AAAAAA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AAGC-G UAAU-UAU-- ---------- ---------- ---------- 3781 ---------- ---GAUAC-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------AUA -----AAAA- ----C-GU-- U-A----GGU CAAGGU-GUA ACC------- 4441 ---------U AUGA-AAUGG --GAAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --CUCU---- ---------- ---------- ---------- ---------- 4561 ---------- ACACCA---- ---------- ---------- ---------- ---------- 4621 ---------- ---------- AGAG------ ----AAUCAA GCA-CGAAA- -GUU--AU-- 4681 ---------- ---------- -UA--U--GA AAC---CA-- ---------- ---------- 4741 ------A-U- -AAC-C-A-- AAG-GAGGA- UUU-AGC-AG UA-AA-CUAA G-AAUAG--- 4801 ---AGUG--C U-UAGUU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UAGGCCA-U GA--AGCA-C GCACACACC- 4921 GCCC-GUC-A CCCU-CCUCA A---AU---- ---------- ------AGAU UC-------- 4981 ----AGUGC- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------A -UCUAACCCU 5101 AUUUAAAC-- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---GCACU-- ---------A 5221 GCUAC----- ---------A U--------G AGAGGAGAC- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--CA U--ACUGGAA AGU-G-UGCU UGGAUAAAU. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Odco.vrg_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Odocoileus virginianus (white-tailed deer) -- mitochondrion. REFERENCE 1 AUTHORS Miyamoto,M.M., Kraus,F. and Ryder,O.A. TITLE Phylogeny and evolution of antlered deer determined from mitochondrial DNA sequence JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 6127-6131 (1990) COMMENT Corresponding GenBank entry: M35874|g342778 (bases 70 to 1022) common_name= white-tailed deer BASE COUNT 346 a 211 c 171 g 225 u 4489 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....CAGAG GUUUGG-UCC CAGCCUUCCU -A-UUAAUC- CCUAG-CAG- A--------- 181 ---------- ---------- ---------- ---------- CUUA--CACA UGC-AA-GU- 241 ---------- ---------- ---------- ---------- -AUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --UC--AUCC CAGUG--AAA AU---GCCCU -C-------- 481 -CA------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------AG 781 UC-------- ---AAUAA-- ---------- AACU------ ---------- ---------- 841 ---------- ---------- ---------- -AA------- G-AGGAGC-- UGGU-AUC-- 901 --A------- ---------- ---------- ---AGCUC-A C--------- ---------- 961 -ACCC----- ---------- ---------G -UAGCU-CAU GA--CGCCUU --GC------ 1021 -----UCA-- --------GC -CAC------ ---------- ---------- ACCCC-CACG 1081 --GGAG---- -----ACA-G CAGUG-AUAA AAA-UUAAGC UA-UAAAC-- ------GAAA 1141 ---------- ---GUUUG-- --ACUAA-G- U-CA-UGC-U AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------UU-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGGGU U--GGUAAA- U---UUCGUG -CCAGCCACC GC-GGUCA-U ACGA-UU--- 1741 -AAC-CCA-- AGUUAAUAGG ----CA---C ACGGC-GUAA AG-CGUGUUU A-AGC----- 1801 ---------- -----ACUAU GCCAAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAGAGU-- 2161 -----UAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- CUCC--AAUU ---AA-GCU- -GUAAAA--- 2281 AGC--CAUA- --AUCA-A-G A-C-GA-AA- AUAAA----- ---------- ---------- 2341 ---------- ------U-AA C-GAAA--GU A-ACUUUA-- ---------- ---------- 2401 -CAACC---- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------G- CU----GAA- -ACA---C-- GAUAGCUAAG 2641 A-UCCAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-UU AGCCCUAAAC AUA--AAU-- 2701 ---AG-UU-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 --AUAUAAAC AA-------- --------AA CUAUUCG-CC A----GAG-- UACUAC-CGG 3061 C--AAUA-GC UUAAAA--CU CAAAGGAC-U UGG------C GGUG-CUUUA --UAC-CCU- 3121 -UCUAGAG-G AGCCUGUUCU AUA-A-UCG- AUA-AACCC- --CGAU---- ------AGAC 3181 CUUA--CCAC CCCUUGCUAA UAC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGUC-UA 3601 UAUA-CC-GC -C----AUCU -UCA------ GCAA--AC-C CU--AAAA-- -AGG-----A 3661 ACAAAA---- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AAGC-A CAAU-CAU-- ---------- ---------- ---------- 3781 ---------- ---UAUAC-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------AUA -----AAAA- ----C-GU-- U-A----GGU CAAGGU-GUA ACC------- 4441 ---------U AUGG-AGUGG --AAAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --UUCU---- ---------- ---------- ---------- ---------- 4561 ---------- AAUCUA---- ---------- ---------- ---------- ---------- 4621 ---------- ---------- AGAA------ ----AACUCU UUA-CGAAA- -GUU--AC-- 4681 ---------- ---------- -UA--U--GA AAU---UA-- ---------- ---------- 4741 ------G-U- -AAC-C-A-- AAG-GAGGA- UUU-AGC-AG UA-AA-CUAA G-AAUAG--- 4801 ---AGUG--C U-UAGUU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UAGGCCA-U GA--AGCA-C GCACACACC- 4921 GCCC-GUC-A CCCU-CUUCA A---AUA-GG ---------- -------CAC A--------- 4981 ----AUAC-- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------A -CUUAAAUUU 5101 AAUUAUAC-- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----GUAU-- ---------U 5221 AAU------- ------CAUA U--------G AGAAGAGAU- AAG-UCGUA- AC-AAGG--- 5281 -U-AAG--CA U--ACUGGAA AGU-G-UGCU UGGAUAA... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Homo_sap_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Homo sapiens (human) -- mitochondrion. REFERENCE 1 AUTHORS Crews,S., Ojala,D., Posakony,J., Nishiguchi,J. and Attardi,G. TITLE Nucleotide sequence of a region of human mitochondrial DNA containing the precisely identified origin of replication JOURNAL Nature 277, 192-198 (1979) COMMENT Corresponding GenBank entry: J01415 (bases 648 to 1601) biol_source= placenta common_name= human NB: L-strand is shown. The H-chain D-loop contains a 7S RNA, starting at base 191 leftward, which is approximately 680 bases long. BASE COUNT 315 a 253 c 181 g 205 u 4488 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .....AAUAG GUUUGG-UCC UAGCCUUUCU -A-UUAGCU- CUUAG-UAA- G--------- 181 ---------- ---------- ---------- ---------- AUUA--CACA UGC-AA-GC- 241 ---------- ---------- ---------- ---------- -AUCC----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --CC--GUUC CAGUG--AGU UC---ACCCU ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --CUAA--AU 781 C--------- ---ACCAC-- ---------- -GAU-CAAA- ---------- ---------- 841 ---------- ---------- ---------- ---------- --AGGAAC-- AAGC-AUC-- 901 --A------- ---------- ---------- ---AGCAC-G CA-------- ---------- 961 -GCAA----- ---------- --------UG -CAGCU-CAA AA--CGCUUA --GC------ 1021 -----CUA-- --------GC -CAC------ ---------- ---------- ACCCC-CACG 1081 --GGAA---- -----ACA-G CAGUG-AUUA ACC-UUUAGC AA-UAAAC-- ------GAAA 1141 ---------- ---GUUUA-- --ACUAA-G- C-UA-UAC-U AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------CCC- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ----CAGGGU U--GGUCAA- U---UUCGUG -CCAGCCACC GC-GGUCA-C ACGA-UU--- 1741 -AAC-CCA-- AGUCAAUAGA -----A---G CCGGC-GUAA AG-AGUGUUU U-AGA----- 1801 ---------- -UCACCCCCU CCCCAA---- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --UAAAGC-- 2161 -----UAAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ACUC--ACCU ---GA-GUU- -GUAAAA--- 2281 AAC--UCC-- --AGUU-G-A C-A--C-AA- AAUAGA---- ---------- ---------- 2341 ---------- ------C-UA C-GAAA--GU G-GCUUUA-- ---------- ---------- 2401 -ACAUA---- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- --------U- CU---GAAC- -ACA---C-- AAUAGCUAAG 2641 A-CCCAAAC- UGGGAUUAGA UAC--CC-CA -CUAUGC-UU AGCCCUAAAC CUC--AAC-- 2701 ---AG-UU-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 --AAAUCAAC AA-------- --------AA CUGCUCG-CC A----GAA-- CACUAC-GAG 3061 C--CACA-GC UUAAAA--CU CAAAGGAC-C UGG------C GGUG-CUUCA --UAU-CCC- 3121 -UCUAGAG-G AGCCUGUUCU GUA-A-UCG- AUA-AACCC- --CGAU---- ------CAAC 3181 CUCA--CCAC CUCUUGCUC- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCC-UA 3601 UAUA-CC-GC -C----AUCU -UCA------ GCAA--AC-C CU--GAUGA- -AGG-----C 3661 UA-CAAA--- ---------- ---------- ---------- ---------- ---------- 3721 ---------- -GU-AAGC-G CAAG-UAC-- ---------- ---------- ---------- 3781 ---------- ----CCAC-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 -------GUA -----AAGA- ----C-GU-- U-A----GGU CAAGGU-GUA GCC------- 4441 ---------C AUGA-GGUGG --CAAG---- ---------- ---------- -----AAAUG 4501 GGCUA-CAUU --UUCU---- ---------- ---------- ---------- ---------- 4561 ---------- -ACCCC---- ---------- ---------- ---------- ---------- 4621 ---------- ---------- AGAA------ --------AA CUA-CGAUA- -GCC--CU-- 4681 ---------- ---------- -UA--U--GA AACU--UA-- ---------- ---------- 4741 ------A-G- -GGU-C-G-- AAG-GUGGA- UUU-AGC-AG UA-AA-CUAA G-AGUAG--- 4801 ---AGUG--C U-UAGUU-GA AC-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AGGGCCC-U GA--AGCG-C GUACACACC- 4921 GCCC-GUC-A CCCU-CCUCA A---GUA--- ---------- -----UACUU CAA------- 4981 ----AGG--- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- -ACAUUUAAC 5101 UAAAACC--- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- -----CCU-- --------AC 5221 GCAUU----- --------UA U-------AU AGAGGAGAC- AAG-UCGUA- AC-AUGG--- 5281 -U-AAG--UG U--ACUGGAA AGU-G-CACU UGGACGAAC. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. //